Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19j12r
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    27   1.9  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   2.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   4.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   9.9  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 246 VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNT 374
           + E  + +  F   V  +K  AL +EL    SL+  ATT++N+
Sbjct: 120 IAESFQRAAGFT--VDCMKENALAIELSDRESLLRAATTSLNS 160


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 246  VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNTNK 380
            V +KL N +SF+      ++++  VEL + TS  DT T ++ T K
Sbjct: 951  VKDKL-NKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLK 994


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 252 EKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNTNKRANFITS*CRFVWIPCH 431
           E LR S +   +  ++   + L+    +  L+DT  + ++ +  A  I + C+F      
Sbjct: 350 EALRQSSTLGPVKQLIADDSCLLN-NLSKLLLDTNISPLDASSIATIIYNMCKFKITKSE 408

Query: 432 HRRELREV 455
           H REL ++
Sbjct: 409 HERELNQL 416


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -1

Query: 203 YSTQQYAHQGHPSPASGSVTVRDCPRCGG--RCRLEHRHSSVHKLTAQR 63
           YS+  Y+   HP P  G  ++ D P+        L    S+VH +   R
Sbjct: 680 YSSSPYSVFSHPPPYMGRQSLNDSPQTSDFKASNLNDSSSNVHSIFQTR 728


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -1

Query: 464 GSVHLTEFAAVVTRDPYKTTSAGDE--VRSFVRIDRGRR 354
           G V    + A    DPY+  SAGD+  VR +   D  RR
Sbjct: 468 GHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDNPRR 506


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 343  NEVADPSSTNRALVLSIG 290
            N+ +DP+STN A+ L IG
Sbjct: 1078 NQFSDPTSTNAAVGLIIG 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,503
Number of Sequences: 5004
Number of extensions: 34130
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)