Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i24r
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.37 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.85 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   2.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   2.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   2.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 214 SVQHRSGDNRK*LPRIYS*NGYCQTCKAWVWNVPSKYRHEVPIPFVMP 71
           S+ +R+  N       Y+ N Y   CK   +N+   Y  ++P+P  +P
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNI--NYIEQIPVPVPVP 129


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 798 LLRPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 688
           L+RP +NN+D VV+  G   +    +N  +KD  LT+
Sbjct: 35  LIRPVSNNNDTVVVKLGLRLSQLIDLN--LKDQILTT 69


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 83
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 83
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 83
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 447 DWENNVLRLGTNDAQYVEVIH 385
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 696 LTSGDYNVIVVDWSSF 649
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 696 LTSGDYNVIVVDWSSF 649
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 249 AATITHGKHYGNQCSTEAEITANN 178
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 798 LLRPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSL 643
           L+RP  NNSD + +  G   +    +N  +K+  +T+  +  +  +W+ + L
Sbjct: 35  LIRPVGNNSDRLTVKMGLRLSQLIDVN--LKNQIMTTNVW--VEQEWNDYKL 82


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 771 DIVVIIHGHSGTATTTINPIVK 706
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 82  FVMPTKLKTKFSVMTNKISFYINY 11
           FV  T L +   VM + +SF+IN+
Sbjct: 244 FVFQTYLPSILIVMLSWVSFWINH 267


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 771 DIVVIIHGHSGTATTTINPIVK 706
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,958
Number of Sequences: 438
Number of extensions: 5947
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)