Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i22r
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    27   4.4  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    26   7.7  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    26   7.7  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 645 CMRNKNTYFQLISRKSKIWSVNTKLT 568
           C+++   Y Q++  K K+W + + L+
Sbjct: 35  CLKDLKRYLQVVDEKYKVWQIRSLLS 60


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 385 Q*IQQDSNKIENRYVSTTFCMQFFRRSANYFSMKKT 278
           Q I+Q+S+   N+Y+   FC  FF  S    S+  T
Sbjct: 153 QVIRQESSIDPNKYILADFCNPFFNPSTLSISIPYT 188


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 696 SKWVKKIPEKSR*KIVQCMRNKNTYFQLISRKSKIWSVNTKL 571
           S  + K+P+++  +IV     +  Y +L   K +IW V  K+
Sbjct: 2   SNSILKVPDQNPQEIVALFSQQEAYAKLGKYKDEIWDVYQKV 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,314
Number of Sequences: 5004
Number of extensions: 64246
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)