Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i22f
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein...    25   3.3  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   4.4  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   5.9  

>CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein
           protein.
          Length = 271

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 453 RYRPILLPSETRVRPRADHPV 515
           RY  ++  ++ R RPR DHP+
Sbjct: 9   RYPELVRRTQGRGRPRQDHPI 29


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 217 TEWTRPGGPAGTP 179
           T+W+RP  PAG P
Sbjct: 187 TQWSRPTEPAGPP 199


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +1

Query: 64  RDVTLEAPTPPKVSRTLERMKLKHNITTDPVNEEKQREVEYQPDLLAVSTQYTKIAYDVF 243
           RD++ E     K +    ++K +H++    +N  KQR       L   S Q TK   +  
Sbjct: 694 RDISAEVSKIEKTAHRFGQLKEQHDMLNYELNNLKQR-------LAQTSFQQTKEEIEEL 746

Query: 244 KQAVVRLQESKAYVIATRT 300
            + +  LQ++      T+T
Sbjct: 747 NKKIETLQKTIVEARETQT 765


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,729
Number of Sequences: 2352
Number of extensions: 15381
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)