Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i21r
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    58   1e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    43   7e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    41   2e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    40   5e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    34   0.030
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.86 
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    28   1.5  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   2.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   2.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.6  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   4.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   6.1  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = -2

Query: 856 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 737
           +T+LGE+L+ EEV +MIREAD DGDG +NYEEF  +++SK
Sbjct: 111 LTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -2

Query: 856 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 737
           M +LG+  T  E+ +MI E D DG+G +++ EF+TMM  K
Sbjct: 38  MRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARK 77



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 856 MTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 740
           +T +  K+ D + +E +REA    D DG+G +  EE   ++TS
Sbjct: 71  LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTS 113


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 18/37 (48%), Positives = 29/37 (78%)
 Frame = -2

Query: 856 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 746
           +T+LGEKL++EE+DE+++   +  DG VNY +FV M+
Sbjct: 103 LTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -2

Query: 847 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 746
           L E + D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 139 LNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = -2

Query: 865 ATSMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 737
           A  M  LGEKL+D EV  M++EAD    G  +Y +FV  + +K
Sbjct: 101 ADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 853 TNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 758
           TNL E    + VD+ I E D D DG++++EEF
Sbjct: 125 TNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 826 EEVDEMIREADIDGDGQVNYEEFV 755
           +EV E IRE ++D  G+V  E+FV
Sbjct: 54  DEVREAIREVNVDSSGRVEPEDFV 77


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 838 KLTDEEVDEMIREADIDGDGQVNYEEFVTMM 746
           KL+ ++++++   ADID DG  +++EF   M
Sbjct: 36  KLSSDKLEKIWDLADIDDDGMFDFDEFAIAM 66


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 826 EEVDEMIREADIDGDGQVNYEEFVTMMTS 740
           +E+ E     D DGDG +  E+  TM+TS
Sbjct: 48  QELKEAFALLDKDGDGNIGREDVKTMLTS 76


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 650 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 760
           S T+L + +M QN +LN+  F H  A  + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 105 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKI 10
           +S + KN +L   K+    P+C+ +T + SF Y I
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAI 382


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 478 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 323
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 120 LSHLHKYNYNAVSINL 167
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 841 EKLTDEEVDEMIREADIDGDGQVNYEE 761
           E+  +EE DEM  E D +G+G    EE
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEE 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,725
Number of Sequences: 5004
Number of extensions: 57346
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)