Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i19f
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.58 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 325 LFMRGSSYGASSCFLTMCQLNSMGMIHQSLRGSRRDGCTSLLIE*FTIQR 474
           L M G  +G     + + Q + MG  +++L   RR+G  S+L   F +QR
Sbjct: 193 LCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQVSFNLQR 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +3

Query: 405 PEFKGIKEGRMYLTTHRMIY------NSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCI 566
           PE +   +G +YLT  ++I+      ++ +N D +++       + +V V  P F A  +
Sbjct: 357 PEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLTIHTIPEVKV-TPRFQAKRL 415

Query: 567 K 569
           K
Sbjct: 416 K 416


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 590 RLGTNFTFYTVGREHRLFHSYILQCNKRKTE*SHGICI 477
           R  T++T Y      + FH       +R+ E +H +C+
Sbjct: 10  RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 317 HISCLCVAPVTEH 355
           H SC+CV  + EH
Sbjct: 485 HKSCICVRFIAEH 497


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 317 HISCLCVAPVTEH 355
           H SC+CV  + EH
Sbjct: 485 HKSCICVRFIAEH 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,518
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)