Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19i15r
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 196 4e-51
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 33 0.052
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 4.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 6.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 7.9
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 196 bits (477), Expect = 4e-51
Identities = 109/294 (37%), Positives = 169/294 (57%), Gaps = 8/294 (2%)
Frame = -1
Query: 858 FLERKVKASLIEDPIEAKKSRDFHSILGLEELSEAVVSQLGVDNPLTRLVPDLHDVHPDD 679
FLERK+ L +P +R F +I+G EL E+V LG D+ T+L+ +L PDD
Sbjct: 322 FLERKILGRLYGEP-----TRQFEAIIGWGELEESV-KLLGEDSEYTKLIQNLEGRDPDD 375
Query: 678 AFSTVPYEKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQD-- 505
AFSTVPYEKGS FL +E +IGGP VF+ FL Y + F++ +++ +FK L+ YF
Sbjct: 376 AFSTVPYEKGSNFLYEIERVIGGPSVFEPFLPFYFRKFAKSTVNEVKFKHALYEYFSPLG 435
Query: 504 -NEKLKSVDWETWLYKSGMPPVIPDYDTSMTKPITALV-----AKINQRNASLISYQDVQ 343
KL S+DW+TW + GMPPV P +DT++ P L + N + S S +D++
Sbjct: 436 LASKLDSIDWDTWYHAPGMPPVKPHFDTTLADPCYKLAESWTNSAKNSDDPSKFSSKDIE 495
Query: 342 TFTPHQIMIFLQELIKHPPLPLDILHTLGAEYKIDSSKNTEILYRWLRLCLRSKDQSILG 163
++ Q +FL + + P + + +G Y SKN E+ +R+ +L L+SK + +
Sbjct: 496 NWSAGQKSLFLDVVYEAVSFPHNYIKRMGDVYSFAESKNAELSFRFFKLALKSKYKPLYN 555
Query: 162 EVFDFVNHIGRMRYVRPLYRDLYDWEDVRNQAIENFLKNEQYMMHVCAHTVKKD 1
+ + V +GRM++VRP++R L + + R AIE F K + + +CA V+KD
Sbjct: 556 TIAERVGSVGRMKFVRPIFRLLNEAD--RAFAIETFEKYKHFYHKICASQVEKD 607
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 33.1 bits (72), Expect = 0.052
Identities = 21/88 (23%), Positives = 38/88 (43%)
Frame = -1
Query: 711 VPDLHDVHPDDAFSTVPYEKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFK 532
VP +HD + F + Y KGS +R + + G + F ++ Y+ + T++
Sbjct: 385 VPIMHDYEINQIFDAISYSKGSCVIRMVSKYV-GEDTFIKGIQKYISKHRYGNTVTEDLW 443
Query: 531 AYLFNYFQDNEKLKSVDWETWLYKSGMP 448
A L + + + S W K+G P
Sbjct: 444 AAL--SAESGQDISST-MHNWTKKTGYP 468
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = -1
Query: 708 PDLHDVHPDDAFSTVPYEKGSLFLRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKA 529
P H D S E + + +ED I GP+ F + + +S+ ++ +F
Sbjct: 434 PKFHSERQKDIMSGNDIEGSASYFEEIEDTISGPDSIPKFYQRPVIKYSKFGIEDFDFGF 493
Query: 528 Y 526
Y
Sbjct: 494 Y 494
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -1
Query: 603 VFDDFLRSYLKNFSRKSLDTD-EFKAYLFNYFQDNEKLKSVDWETWLYK 460
VF+ L + LK+FSRKSLD++ E LF+++ KL+ + WL K
Sbjct: 581 VFEKHLNT-LKHFSRKSLDSEIEVVDELFSFW----KLQPFNAVMWLDK 624
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 114 PLYRDLYDWEDVRNQAIENFLKNEQYMMHVCAHTV 10
P+ +L +W + ++IENF K + C H V
Sbjct: 69 PVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEV 103
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 7.9
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Frame = -1
Query: 756 AVVSQLGVDNPLTRLVPDLHDVHPDDAFSTVPYEKGSLFLRYLEDLIGGPEVFDDFLRSY 577
A+VSQLG D + +P ++ V S YE L R L+ G P D ++ +
Sbjct: 1035 AIVSQLGYDYSI--FIPMVNKVLVSHKISHPAYEL--LVSRLLK---GEPLPKDVVVKEF 1087
Query: 576 LKNFSRKSLDT-DEF-------KAYLFNYFQDNEKLKSVDWETWLYKSGMPPVIPDYDTS 421
S K T DE +A L ++ ++KL DW+ W+ + + ++ + +S
Sbjct: 1088 KPRPSTKPFSTQDEVLTKLPVDQASLKAAWESSQKLTRDDWQDWIRRISI-ELLKESPSS 1146
Query: 420 MTKPITALVAKINQR-----NASLISYQDVQTFTPHQIMIFLQELIKHPP-LPLDILHTL 259
+ + L + N S +S D T + + ++ EL + P + ++IL TL
Sbjct: 1147 ALRSCSTLAGIYHPLARDLFNVSFLSCWDELTESNKKNLVKSIELAMNAPNISVEILQTL 1206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,812
Number of Sequences: 5004
Number of extensions: 75387
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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