Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i14f
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormo...    28   3.2  
L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 131 protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 321 GVCSALPCACFY*KCAGSKWTRV 389
           GV S   CA F+ + A SKW+R+
Sbjct: 23  GVISCRACAAFFRRAADSKWSRM 45


>L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical
           protein C02D5.3b protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 318 RIFPHDPQSQVQQQHILTIIKFQVSKLINPRIVECKN 208
           RI P DP  +VQQ+ +L  I  QVS      +   KN
Sbjct: 97  RILPTDPYEKVQQKLLLDRISGQVSPAFYGVVQAVKN 133


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 318 RIFPHDPQSQVQQQHILTIIKFQVSKLINPRIVECKN 208
           RI P DP  +VQQ+ +L  I  QVS      +   KN
Sbjct: 97  RILPTDPYEKVQQKLLLDRISGQVSPAFYGVVQAVKN 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,923
Number of Sequences: 27780
Number of extensions: 191279
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)