Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i08r
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    30   0.27 
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    30   0.35 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   3.3  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    27   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  

>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 614 GVGHXAIXXXXXXXXXXXVGCAXELCEXXMSLGASXALDRHAPXYNKFLEECGPYDAIID 435
           GVG  A+              + E  +   SLGA+  LD       + L + GPYD + D
Sbjct: 177 GVGTFAVALAKALECEVTTISSTENLDLCKSLGATHTLDYKKDNLVERLADLGPYDFVFD 236

Query: 434 C 432
           C
Sbjct: 237 C 237


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 170 RRLSESGEYTVAVEQVYPWWEGLAAYERMARGSARGKLILDFK 42
           R+  ++GEY +A    +PWW    A ++      R +L  +F+
Sbjct: 58  RKSYKNGEYVLAKMSSFPWWPARVASQKSIPTEVRERLKRNFR 100


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 144 HGGCGAGVPLVGRVGGIRAHGP-GLGSRETDL 52
           HGGCGA  P + R  G+R  G    G  E+DL
Sbjct: 172 HGGCGAAQPTI-RKDGLRLWGSWKRGKDESDL 202


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 71  PSPGPCARMPPTLPTKGTPAPQPP 142
           P+P P   +PP  P  G P P PP
Sbjct: 744 PAPAPIP-VPPPAPIMGGPPPPPP 766


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 98  PPTLPTKGTPAPQPPCT 148
           PP +PTK TP+ +P  T
Sbjct: 234 PPRIPTKATPSAEPSMT 250


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 476 KFLEECGPYDAIIDCAGLGGWEAGA 402
           +  EE GP DA+  C G GG  +G+
Sbjct: 167 ELFEEVGPLDALFVCLGGGGLLSGS 191


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 38  VP*SLRSVSREPSPGPCARMPPTLPTKGTPAPQPP 142
           +P +      +P P P    PPTLP + T   Q P
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP 257


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 56   SVSREPSPGPCARMPPT-LPTKGTPAPQPP 142
            SV+  P P P + +PP   P  G P   PP
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,847
Number of Sequences: 5004
Number of extensions: 34903
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)