Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i08r
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-4|AAY44003.1|  381|Caenorhabditis elegans Hypothetical ...    42   4e-04
U61949-6|AAB03154.1|  166|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    30   1.3  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   2.3  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    29   2.3  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    28   5.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   5.3  
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    28   7.0  
AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    28   7.0  
Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    27   9.3  

>AF067618-4|AAY44003.1|  381|Caenorhabditis elegans Hypothetical
           protein F56H1.6 protein.
          Length = 381

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 35/56 (62%)
 Frame = -3

Query: 212 WAYFMPNADDIEMLRRLSESGEYTVAVEQVYPWWEGLAAYERMARGSARGKLILDF 45
           +A+F P++D +  L R +E G+    VEQV  + E   AYE++++ + RGK ++ +
Sbjct: 325 YAFFRPSSDLMSQLSRFAEDGKIVPVVEQVMGFEELEKAYEKVSQLNGRGKTVIKY 380


>U61949-6|AAB03154.1|  166|Caenorhabditis elegans Hypothetical
           protein F49E8.6 protein.
          Length = 166

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 71  PSPGPCARMPPTLPTKGTPAPQPP 142
           P PGP +  PPTLPT     P PP
Sbjct: 129 PPPGPSSSAPPTLPTSSGNLPPPP 152


>Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 306 GGGREPQGQTPSVRVPEERAAEGDVSGEAPATRTRLPTPQTRAVDD 443
           GG  E +  TP+V+ P+E  A         A + +L TP ++   D
Sbjct: 439 GGDVESKPATPAVQTPDESRATSTARSRESARKEKLATPDSKNAAD 484


>AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 306 GGGREPQGQTPSVRVPEERAAEGDVSGEAPATRTRLPTPQTRAVDD 443
           GG  E +  TP+V+ P+E  A         A + +L TP ++   D
Sbjct: 439 GGDVESKPATPAVQTPDESRATSTARSRESARKEKLATPDSKNAAD 484


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 47  SLRSVSREPSPGPCARMPPTLPTKGTPAPQPP 142
           SL S S   SP      PP LP    PAP PP
Sbjct: 303 SLASTSASSSPSDPCPSPPLLPPVCPPAPPPP 334


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +1

Query: 67  RAEPRAMRSYAANPSHQGYTCSTATVYSPLSDKRLSISI 183
           R    A++++A++ +  G+T STA+++SPL      +S+
Sbjct: 509 RTTKSALQNFASSATANGFTLSTASMHSPLRLSHPEVSL 547


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +2

Query: 38  VP*SLRSVSREPS---PGPCAR-MPPTLPTKG--TPAPQPPCTLHFQTNA*AFR 181
           VP S   + R PS   P P  R M  TLP     TP P PP T  F T   +FR
Sbjct: 168 VPPSKERIKRIPSYLKPTPAPRSMSATLPRARLKTPPPPPPVTNQFDTLPVSFR 221


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +3

Query: 297 ELAGGGREPQGQTPSVRVPEERAAEGDVSGEAPAT 401
           E AGGG EP G  P        A EG   GEAP T
Sbjct: 411 EGAGGGAEPAGAAPEAAA---AAPEGAGGGEAPPT 442


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 71  PSPGPCARMPPTLPTKGTPAPQPP 142
           P P P A +PP LP    P P PP
Sbjct: 483 PPPSPPA-LPPALPNPNEPPPPPP 505


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 300 LAGGGREPQGQTPSVRVPEERAAEGDVSGEAPATRTR 410
           LA GG  P  +TP+ + P  R  +  V   AP T TR
Sbjct: 44  LAAGGATPAPKTPAPKTP-SRTTKSTVDTPAPKTPTR 79


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 175 CLGVCLKVESTRWLWSRCTLGGKGWRH 95
           C+G+  +   ++W  +RCT G K  +H
Sbjct: 337 CVGLTAEPTDSKWFCTRCTKGNKSKKH 363


>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 74  SPGPCARMP-PTLPTKGTPAPQPP 142
           +PGP A  P PT P  G PAP+ P
Sbjct: 99  APGPRAPAPAPTRPQYGVPAPRAP 122


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 41  P*SLRSVSREPSPGPCARMPPTLPTKGTPAPQPPCT 148
           P   R+    P P P  R+P T P +  P  +PP T
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMT 163


>U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical
           protein F26A1.11 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 65  REPSPGPCARMPPTLPTKGTPAPQPPC 145
           R PSP    R PP+ P +  P  QP C
Sbjct: 38  RPPSPSRPQRPPPSRPQRPPPPRQPRC 64


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 199 CPTLTISKCLGVCLKVESTRWLWSRCT-LGGKGW 101
           CP  T++   G CL  +  +W+  +CT +  K W
Sbjct: 242 CPICTLASKNGTCLCTKCQKWVHLKCTGIRSKQW 275


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 32  AVVP*SLRSVSR----EPSPGPCARMPPTLPTKGTPAPQPPCTLHFQTN 166
           AVVP ++   S     +  P PC  +PPT  T  T   +PPC     TN
Sbjct: 113 AVVPPAVSGTSPPAPVDQKPPPC--IPPTTTTTTTTTTRPPCPYPPATN 159


>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 223 RTCAGPTSCPTLTISKCLGVCLKVESTRWLWSRCTLGGKGWRHTSAWPGARLA 65
           +TC GPT+ PT+   +C    + VE  R    R  + G     T    G   A
Sbjct: 233 QTCRGPTTAPTM--GRCWSDDVMVEGNRCCAKRDVIDGSSSNRTQTCRGPTTA 283


>Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical
           protein T04F8.9 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = +3

Query: 315 REPQGQTPSVRVPEERA-------AEGDVSGEAPATRTRLPTPQ 425
           R+P+ Q+P V  P+E         +E   S   P T TR P PQ
Sbjct: 222 RKPRRQSPRVPKPQETVIVMEQDNSEASTSTSVPKTPTRTPLPQ 265


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 83  PCARMPPTLPTKGTPAPQPP 142
           P + +PP  P    PAPQPP
Sbjct: 821 PLSTLPPPPPPNPPPAPQPP 840


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,909
Number of Sequences: 27780
Number of extensions: 234686
Number of successful extensions: 1408
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)