Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19i08f
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 41 1e-04
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 38 0.001
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 31 0.20
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.46
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 27 2.5
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 27 3.3
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 26 4.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 5.7
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 5.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.7
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 26 5.7
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.6
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 10.0
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 10.0
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 41.1 bits (92), Expect = 1e-04
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Frame = +1
Query: 199 ASHAEACMGRMRAWRIHAYG-PTTELRLEEARVPPLRA---PDEILVRVHASSVNPIDVA 366
+S ++ G AW + G P L LE+ P A P ++LV V A+S+NP+D
Sbjct: 2 SSETKSEFGTKSAWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDY- 60
Query: 367 MIGGYGSKILNTLRTIESGEGIEFPLIAGRDFVGEVERAGVGAK-LKRGERIWG 525
K++NT + I + P I G DF G V G K +R+WG
Sbjct: 61 -------KLMNTYQMIAKAL-FKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWG 106
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Frame = +1
Query: 271 LRLEEARVP-PLRAPDEILVRVHASSVNPIDVA-MIGGYGSKILNTLRTIESGEGIEFPL 444
L +E VP P E+LV++ A+++NP D+ GG+ + +P
Sbjct: 21 LGIEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTV--------------YPR 66
Query: 445 IAGRDFVGEVERAGVGAKLKRGERIWGVIPPH----RQGAHSEYVVVKNSWAGKAPSTLS 612
I GRD+ G V GA G R++G + G H+EY ++ A + PS LS
Sbjct: 67 IVGRDYAGTVIS---GASHLVGTRVFGTSGSELSFTKDGTHAEYCIIPEKAAVRMPSNLS 123
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +1
Query: 391 ILNTLRTIESGEGIEFPLIAGRDFVGEVERAGVGAKLKRGERIWGVIPPHRQGAHSEYVV 570
++ + + I G + +P I+ D + +++ + AK+K W G+H++YV+
Sbjct: 176 VVKSFQNIPVGAYVHYPTIS-TDMLKSLKQVSLLAKVKMAYWRWFAQLYSDAGSHADYVM 234
Query: 571 VKNSW 585
+SW
Sbjct: 235 TNSSW 239
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 524 PQIRSPRFSFAPTPALSTSPTKSRPAIKGNSIPSPLSMVRSVFNILEP*PPI 369
P + P + P PA S +P +P++ +P+P S + V PP+
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 524 PQIRSPRFSFAPTPALSTSPTKSRPAIKGNSIPSP 420
P + P + P PA S +P +P++ +P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 524 PQIRSPRFSFAPTPALSTSPTKSRPAIKGNSIPSPLSMVRSVFNILEP*PPIIATSMG 351
P + P + P P S +P +P++ +P+P S V PP+ A S G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP-SGAPPVPKPSVAAPPVPAPSSG 1177
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 223 GRMRAWRIHAYG-PTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMIGG-YGSK 390
G +A YG P LR VP + +++ VR AS +NP D+ I G Y SK
Sbjct: 19 GMAKAIAYSEYGNPKEVLRAVSYNVPKC-SKNQVNVRFLASPINPSDINQIQGVYPSK 75
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -3
Query: 600 WGFACPGIFHNYIFRMCPLAMRGYNSPN 517
W + G +H+ + +C +A+ Y+ PN
Sbjct: 1050 WSWITNGFYHSLLLFLCSIAVFYYDGPN 1077
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 491 PTPALSTSPTKSRPAIKGNSIPSPLS 414
PTPA T P +P+I +S+ SP+S
Sbjct: 130 PTPANETVPRIKQPSIALDSLESPVS 155
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 296 GTRASSSLNSVVGPYACIRHALIRPIQASA*DAA 195
G S+SL+ VVG H L+ PI SA D A
Sbjct: 263 GLLPSASLSGVVGKSEEKVHCLVEPIHGSAPDIA 296
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 512 SPRFSFAPTPALSTSPTKSRPAIKGNSIPSPLSMVRSVFNILEP*PPIIAT 360
+P S + +P LS+ K+ + + PSPL +S NI+ P++ T
Sbjct: 259 TPPASSSSSPLLSSQTVKTTTS-NASRQPSPLVSSKSTDNIIRSHSPVLLT 308
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 509 PRFSFAPTPAL-STSPTKSR 453
P+FS+ PTP + ST+PT R
Sbjct: 364 PKFSWTPTPRVKSTAPTPKR 383
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 110 CIFLIFYFNLFKLK 69
CIFL FYF FK++
Sbjct: 310 CIFLYFYFRRFKIR 323
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 433 EFPLIAGRDFVGEVERAGVG-AKLKRGERI 519
+ PLI G + G V + G G +LK G+R+
Sbjct: 62 KMPLIGGHEGAGVVVKVGAGVTRLKIGDRV 91
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 569 TTYSECAPWR*GGITPQIRSPRFS 498
T Y+ PW + P+IR PR +
Sbjct: 341 TLYTPLQPWEKRSVKPEIRRPRLN 364
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 506 RFSFAPTPALSTSPTKSRPAIKGNSIPSPLS 414
++SF P PA ++P +S P G + +P+S
Sbjct: 628 QYSFQPRPATPSNPPRSLPPPSG-QVNAPMS 657
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 509 PRFSFAPTPALSTSPTKSRPAIKGNSIPSPLSMVRSVFNILEP 381
P S P A TSP S I ++ P+P++ N P
Sbjct: 249 PLSSLPPLVAAPTSPNTSSTLITQSAAPTPIASTSIRINSFNP 291
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 445 SKGILSL-HHFLWFAVCLIF*NH 380
+K IL + HH +WF C+ F NH
Sbjct: 117 NKCILRMDHHCMWFKNCVGFRNH 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,401
Number of Sequences: 5004
Number of extensions: 57681
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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