Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19i08f
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 63 2e-10
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 57 1e-08
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781... 40 0.002
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514... 38 0.007
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115... 35 0.052
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730... 32 0.36
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 31 1.1
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 31 1.1
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 29 2.6
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 5.9
06_01_0496 + 3550006-3550690,3550710-3551446 28 7.8
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Frame = +1
Query: 196 AASHAEACMGRM--RAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAM 369
AAS + A G RA + +G L + + P P ++LVR A S+NP+D+ M
Sbjct: 17 AASTSAAAAGEKSCRAVVVPRFGGPEVLEVRQGVPVPDLKPGDVLVRARAVSINPLDLRM 76
Query: 370 IGGYGSKILNTLRTIESGEGIEFPLIAGRDFVGEVERAGVG-AKLKRGERIWGVIPPHR- 543
GYG I + PLI GRD GEV G + G+ ++G + P
Sbjct: 77 RSGYGRSIFEPV----------LPLIIGRDISGEVAATGTSVSSFTIGQEVFGALHPTAI 126
Query: 544 QGAHSEYVVVKNSWAGKAPSTLSDI 618
+G +++Y ++ PSTLS +
Sbjct: 127 RGTYTDYAILSQDELTSKPSTLSHV 151
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 56.8 bits (131), Expect = 1e-08
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Frame = +1
Query: 193 VAASHAEACMGRMRAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMI 372
V + A M+AW YG + L+L +A P A D++LVRV A+++NP+D
Sbjct: 70 VTTAEAGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRR 129
Query: 373 GGYGSKILNTLRTIESGEGIEFPLIAGRDFVGEVERAGVGAK-LKRGERIWGVIP----- 534
G + +S P + G D G V +AG K LK G+ ++G I
Sbjct: 130 AG-------KFKATDS----PLPTVPGYDVAGVVVKAGRKVKGLKEGDEVYGNISEKALE 178
Query: 535 -PHRQGAHSEYVVVKNSWAGKAPSTL 609
P + G+ +EY V+ P +L
Sbjct: 179 GPKQSGSLAEYTAVEEKLLALKPKSL 204
>09_04_0643 +
19176561-19176644,19176761-19176902,19178084-19178172,
19178470-19179195
Length = 346
Score = 39.9 bits (89), Expect = 0.002
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +1
Query: 199 ASHAEACMGRMRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPIDVAMIG 375
A+ A+A MRA + YG E L+ VP P E+L+++ A+S+NPID +
Sbjct: 2 AAAADAAPKTMRAVQYDKYGGGPE-GLKHVEVPIPAPKEGELLIKMEAASINPIDWKIQK 60
Query: 376 GYGSKILNTLRTIESGEGIEFPLIAGRDFVGEVERAGVGAK-LKRGERIWGVIPPHRQGA 552
G L +FP I D GEV G G K G+++ + P+ G
Sbjct: 61 GMLRLFLPK----------KFPFIPVGDLSGEVVELGGGVSGFKPGDKVVSMSFPN-CGG 109
Query: 553 HSEYVVVKNSWAGKAPSTLS 612
+EY V S P +S
Sbjct: 110 LAEYAVAPASLTVARPPEVS 129
>09_04_0636 +
19150966-19151037,19151150-19151291,19151404-19151492,
19151589-19152308
Length = 340
Score = 37.9 bits (84), Expect = 0.007
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +1
Query: 226 RMRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPIDVAMIGGYGSKILNT 402
RMRA + YG + L+ VP P E+L+++ A S+N +D G +
Sbjct: 7 RMRAVQYDKYGGGAQA-LKHVEVPIPTPKKGEVLIKMEAGSINQVDWKFQKGVARPFMPN 65
Query: 403 LRTIESGEGIEFPLIAGRDFVGEVERAGVG-AKLKRGERIWGVIPPHRQGAHSEYVVVKN 579
+FP I D GEV G G + K G+++ + P G +EY V +
Sbjct: 66 ----------KFPFIPVYDLAGEVVELGRGVSSFKVGDKVIAINFP-GGGGLAEYAVAQA 114
Query: 580 SWAGKAPSTLS 612
S P +S
Sbjct: 115 SRTAPRPPEVS 125
>04_03_0566 +
17209455-17209565,17210159-17210203,17211456-17211569,
17211943-17212081,17212324-17212415,17213245-17213517
Length = 257
Score = 35.1 bits (77), Expect = 0.052
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +1
Query: 229 MRAWRIHAYGPTT-ELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMIGGYGSKILNTL 405
MRA + YG L+ E VP ++ E+L++V A+SVNPID ++ G L
Sbjct: 74 MRAVQYTGYGGGAGALKHVEIPVPSVKK-HEVLIKVEAASVNPIDWSIQKGMLRPFLP-- 130
Query: 406 RTIESGEGIEFPLIAGRDFVGEVERAGVGA-KLKRGERI 519
+FP I D GE+ AG +LK G+++
Sbjct: 131 ---------KFPFIPVTDVAGEIVEAGSAVHELKVGDKV 160
>09_04_0641 +
19172370-19172459,19172539-19172680,19172951-19173039,
19173096-19173806
Length = 343
Score = 32.3 bits (70), Expect = 0.36
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +1
Query: 229 MRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPIDVAMIGGYGSKILNTL 405
MRA + YG E L+ VP P E+L+++ A+S+NPID + G L
Sbjct: 14 MRAVQYDGYGGGAE-GLKHVEVPIPSPKKGEVLIKMEAASINPIDWKIQKGMLRPFLPW- 71
Query: 406 RTIESGEGIEFPLIAGRDFVGEVERAGVGA-KLKRGERI 519
+FP I D G+V G G + + G+++
Sbjct: 72 ---------KFPSIPACDLAGKVAAVGGGVRRFELGDKV 101
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 229 MRAWRIHAYGP-TTELRLEEARVPPLRAPDEILVRVHASSVNPIDV 363
MRA + YG L+ E VP ++ DE+LV+V A+S+N D+
Sbjct: 10 MRAVQYSGYGGGAAALKFVEIPVPSVKK-DEVLVKVEAASINQSDL 54
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -1
Query: 551 APWR*GGITPQIRSPRFSFAPTPALSTSPTKSRPAIKGNSIPSPLS 414
APW P + F+P PAL SPT S P G + S LS
Sbjct: 275 APW------PYTPGQQAKFSPPPALYASPTPSPPTFAGGYLQSRLS 314
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -1
Query: 671 PRTALAAVRPVYSAPPADISDNVDGAL-PAQEFFTTTY--SECAPWR*GGITPQIRSPRF 501
P +A + R Y PP + + D AL P QE SE A +PQ+ R
Sbjct: 52 PESAPSTPREEYHTPPPSLDEARDEALVPHQEGVVDVNGGSEAA-----AKSPQLSPVRL 106
Query: 500 SFAPTPALSTSPTKSRPAIKG 438
+P+P P PA+ G
Sbjct: 107 QVSPSPHRLLPPAPGSPAVNG 127
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = -1
Query: 524 PQIRSPRFSFAPTPALSTSPTKSRPAIKGNSIPSPLSMVRS---VFNILEP*PPIIATSM 354
P++ +F PTP +SP +P + ++ S +M S ++L P P I S
Sbjct: 1269 PEVAFQPPAFPPTPVAQSSPCSIKPTVPSSATSSSSTMQESAAKTSDVLSPTGPSILPSK 1328
Query: 353 GFTEDA*TRTKISSGALSGGTRASSSLNSVVGP 255
+ TK SS L GT SSSL S+ P
Sbjct: 1329 E------SMTKPSS-PLPDGT-ISSSLLSIPMP 1353
>06_01_0496 + 3550006-3550690,3550710-3551446
Length = 473
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 541 DEGV*LPKFALHALVLLPHQPFQ 473
DEG P+++LH V+LPH PFQ
Sbjct: 376 DEGGGGPRWSLHCTVVLPH-PFQ 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,167,846
Number of Sequences: 37544
Number of extensions: 407303
Number of successful extensions: 1207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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