Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19i07r
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 33 0.075
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.53
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.8
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 3.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 3.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 4.9
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 27 4.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 6.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 6.5
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 26 8.6
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 26 8.6
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 8.6
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 157 RFGLYEVDYDSPELTRTPRKSAFIFKEIVKSRTLDFDYKP*KAT 26
R GL+ DYD L + P+ A I K++ SR L + P KA+
Sbjct: 209 REGLFTTDYDRIPLIKVPKFDAIIEKKLANSRPLTALFGPMKAS 252
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 371 QKFVEAPWCGLNSVMRTNGPFLLVIKEYSNIIIIRRYF 484
+K + WC N N PF +V+ Y +++ +YF
Sbjct: 929 RKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYF 966
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 553 DFFGLNHYSTFLTYRNESVVGYYEIP--SYNDDVGVLFYDKEEWSI 422
DF L+ S L E+ V +I +YND V +YD EEW++
Sbjct: 371 DFPSLSSISKDLCVPIETPVSEIDISLTAYNDPVISPYYDTEEWNL 416
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.1 bits (57), Expect = 3.7
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 162 VYPDIHSK--LSIKLQGVYSLISDPSLIASRRAFKYNLRCVIRSLSSKPVRVAKPFSVII 335
+ P+IH +S LQG L +P ++A+ NL C + + V PF I
Sbjct: 443 INPEIHLSPMVSALLQG---LTDNPRIVANCCWAFMNLVCHFAPVDNHQTSVMTPFYEAI 499
Query: 336 IGTLL 350
IG+LL
Sbjct: 500 IGSLL 504
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 667 YPEIVKQRVAAKSAEQGFLRSRFP-ELSPEEVQYIRGTSDFFGLNHYSTFLT 515
YP+++ +RV E GF+ S++P +L+ +++ S++ L H TF++
Sbjct: 821 YPKLILKRVLRFLEEIGFITSQYPRKLTDTGALFLKHPSEWGVLQH--TFIS 870
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 499 VVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISN 356
V+ Y+ P YND + Y++ S S N +K P + LLR +++
Sbjct: 476 VMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLLRALND 523
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 331 ITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFEWMSGYTQR 155
+T + L+G + R H + LLD + + S +L + WS D F++ T +
Sbjct: 785 LTSKNWIPLSGLLFSLR-AHDTFMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQ 842
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 180 SKLSIKLQGVYSLISDPSLIASRRAFK-YNLRCVIRSLSSKPVRVA 314
S+L ++QG+ ++ +P LIA+ R K NL+ + + P R+A
Sbjct: 97 SELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQEHYNITPERIA 142
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 865 LLAHAKAYHIYDKEFRPTQNGNISITISCQWYEPE----SDREEDIN 737
++ H +A ++ + FR N + C++Y PE DR +DI+
Sbjct: 241 MIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQDIH 287
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 514 YRNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISNFYNN 344
+R+ S YY + DV +L D E W+I + + +P G Q+S YNN
Sbjct: 141 WRHSSFAQYYLYNTETKDVNMLGQDNEHWTI---SLAEWSPTG-----HQLSFVYNN 189
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 543 PKKSDVPRMY*TSSGLSSGNRERKKPC 623
PKK+ + TS+ SSGN +KPC
Sbjct: 53 PKKNTAHKNSTTSTVASSGNTTMEKPC 79
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 337 IIITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIR 215
III E+ + GFEDN+ + H R + A L K S+I+
Sbjct: 150 IIIDESLGCKVKGFEDNNIVRHSRGKIEATLVHNKRISNIK 190
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = -3
Query: 358 NFYNNVPIIITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFE 179
NF N PI+ TE +L +D T + Y +L GS IRL WS + +
Sbjct: 312 NFLFNQPIL-TELFDGSLPENTQSDT-TSMAPYQRSLQLEFMTGSLIRLSNLWSEISRWA 369
Query: 178 WMSGYTQ 158
GYT+
Sbjct: 370 LCGGYTK 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,999
Number of Sequences: 5004
Number of extensions: 80578
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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