Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19i07f
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 172 3e-43
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 165 2e-41
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 32 0.40
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 31 0.91
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 31 0.91
Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical pr... 29 2.8
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 29 2.8
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical ... 28 6.4
AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical ... 28 6.4
AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical ... 28 8.5
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 172 bits (418), Expect = 3e-43
Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 8/230 (3%)
Frame = +2
Query: 104 EFPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKR 283
+FPK F ATA+YQIEGA +++G+ + WD A P + DNS D++ D YK
Sbjct: 6 KFPKNFKLATATAAYQIEGAKDLNGRGFSTWD-AIRLEPGRILDNSDPDLSCDGLLKYKE 64
Query: 284 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 463
DV ++ E+GV YRFS+SW+RILP INE G+ +Y +L L + NIEP++T++H+
Sbjct: 65 DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124
Query: 464 DLPQKLQDMG-GWTNPYIIDWYADYARVLFQKFGDRVKNWITINE------PKEICFQG- 619
D+P + D G W N + + +A + FQKFGD VK WIT NE + +G
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNEINCQAWGSIVKVEGE 184
Query: 620 YAIGTLAPAYTMSGVADYLCGKNVLLAHAKAYHIYDKEFRPTQNGNISIT 769
+ + P A Y N+LL HAK Y YD+ ++PTQ+G + IT
Sbjct: 185 FWLCPERPEIENHKQAPYFGAANMLLTHAKIYRNYDQNYKPTQHGILGIT 234
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 165 bits (402), Expect = 2e-41
Identities = 90/230 (39%), Positives = 126/230 (54%), Gaps = 8/230 (3%)
Frame = +2
Query: 104 EFPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKR 283
+FPK F ATA+YQIEGA N+DG+ + WD + + DNS D++ + YK
Sbjct: 6 KFPKNFQLATATAAYQIEGAKNLDGRGFSTWD-SIRSENGRIHDNSDPDLSCEGRLKYKE 64
Query: 284 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 463
DV ++ ++GV YRFS+SW+RILP INE G+ +Y ++ L IEP++T++H+
Sbjct: 65 DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124
Query: 464 DLPQKLQDMG-GWTNPYIIDWYADYARVLFQKFGDRVKNWITINEPKEICFQGYAI--GT 634
D+P + D G W N + + +A + FQKFGD VK WIT NE + G
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNEINMQAWSSVVKIEGE 184
Query: 635 L-----APAYTMSGVADYLCGKNVLLAHAKAYHIYDKEFRPTQNGNISIT 769
L P A Y+ N+LL HAK Y Y K ++ TQNG I IT
Sbjct: 185 LWLCPDRPEIENHEQAPYIAATNMLLTHAKIYRNYQKNYKETQNGLIGIT 234
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 530 DYARVLFQKFGDRVKNWITINEPK-EICFQGYAIGTLAPAYTMSGVADYLCGKNVLLAHA 706
DY+ ++ G+ I I P+ E+ F GY I T P Y+ LCG N H
Sbjct: 1393 DYSAYQIERLGESA---IVIELPEGEVRFDGYTIKTKIPYYSRKNQLCGLCGNNDDEVHQ 1449
Query: 707 KAY 715
+ Y
Sbjct: 1450 RVY 1452
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 530 DYARVLFQKFGDRVKNWITINEPK-EICFQGYAIGTLAPAYTMSGVADYLCGKN 688
DY+ ++ G+ I I P+ E+ F GY I T P+Y+ LCG N
Sbjct: 1393 DYSAYQIERLGESA---IVIELPEGEVRFDGYTIKTQLPSYSRKNQLCGLCGNN 1443
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 530 DYARVLFQKFGDRVKNWITINEPK-EICFQGYAIGTLAPAYTMSGVADYLCGKN 688
DY+ ++ G+ I I P+ E+ F GY I T P+Y+ LCG N
Sbjct: 1393 DYSAYQIERLGESA---IVIELPEGEVRFDGYTIKTQLPSYSRKNQLCGLCGNN 1443
>Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical
protein T23F11.5 protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 316 INTKFSYHFNISFVKFIGIICDVSRRVIGYRAGYFVTGTIPYIFSFSVNIPSAFDLVRGC 137
++T+FS NIS+ I CD S Y +G + I + S+N F ++R
Sbjct: 1 MSTQFSLSSNISYDDPISFECDTS-----YDSGLELLKYIIQVTLLSINFILNFLIIRVT 55
Query: 136 SSSKQKSFRE 107
SK FRE
Sbjct: 56 MFSKNNDFRE 65
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 530 DYARVLFQKFGDRVKNWITINEPK-EICFQGYAIGTLAPAYTMSGVADYLCGKN 688
DY+ ++ G+ + I I P+ E+ F GY I T P+Y+ LCG N
Sbjct: 1395 DYSAHQIERLGE---SDIVIELPEGEVRFDGYTIKTQLPSYSRKNQLCGLCGNN 1445
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 263 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKY 430
S LYK++++ VD R S + + + T+ PDY N VA ++++ Y
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSY 187
>AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical
protein K07B1.4b protein.
Length = 339
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 296 IRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHWDLPQ 475
++ LG ++ F +T +L + P Y+ Y L + Y + IY W+ P+
Sbjct: 20 LQTLGALHFFFITLFTPVLVLTVPFYM------LYTVLWPLIFLYGL---WMIYDWNSPK 70
Query: 476 KLQDMGGW-TNPYIIDWYADYARVLFQKFGD 565
K M W I WYA+Y V D
Sbjct: 71 KGAYMSNWFQRQRIHSWYANYFPVKLHTTSD 101
>AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical
protein K07B1.4a protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 296 IRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHWDLPQ 475
++ LG ++ F +T +L + P Y+ Y L + Y + IY W+ P+
Sbjct: 30 LQTLGALHFFFITLFTPVLVLTVPFYM------LYTVLWPLIFLYGL---WMIYDWNSPK 80
Query: 476 KLQDMGGW-TNPYIIDWYADYARVLFQKFGD 565
K M W I WYA+Y V D
Sbjct: 81 KGAYMSNWFQRQRIHSWYANYFPVKLHTTSD 111
>AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical
protein F43C11.4 protein.
Length = 201
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 346 TSPGHRE--SVIINTKFSYHFNISFVKFIGIICDVSRRVIGYRAGYFVTG 203
T PG + S II Y I+ + + GI+CD S V Y G G
Sbjct: 130 TPPGFTDFTSFIIQPPEPYDAGINTIDYFGIVCDGSLAVSQYPRGIMPLG 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,213
Number of Sequences: 27780
Number of extensions: 404254
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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