Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i01r
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   2.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.1  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   4.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   8.3  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 15   ISIFLVSNIK-F*RRVNLRCLTN*VII*LLHFKYFVNGILFTASFFNIA 158
            I  FL +N + F R++      +  +   LHFKYF+N +L   +F N A
Sbjct: 1045 IKSFLANNFRDFRRQIRKLHCASLELKSSLHFKYFLNLVLHIGNFMNDA 1093


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 166  LIHKLRRLTQFEHLNEINLEHISL 237
            L+H LRR+  FE +N++N+ ++ +
Sbjct: 1199 LLHHLRRIIAFEKVNKMNIRNVCI 1222


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 548 IYERNLLCLLKIQRASHEYYIVSSLSLGDPLIINKFSVRIKIALI*HNGTN 700
           +Y+  +  +L+ +    EYY+   LSL D L+IN         LI H+GTN
Sbjct: 260 VYQTKIARILR-EENEDEYYVQKLLSLND-LLINVIEECSNSDLI-HSGTN 307


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 121  MEYYSLPRFLILQILLIHKLRRLTQFEHL-NEINLEHI 231
            ME+ S+ R  ILQ+LLI  +  L   E + N I  EH+
Sbjct: 1616 MEFRSMIRKCILQLLLISIVAELLDNEEVFNHIPHEHV 1653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,587
Number of Sequences: 5004
Number of extensions: 64835
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)