Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i01r
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.71 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 311 FGLVLFKCLLCLDYFHSLESSILYCKLIC-SKLISFKCSNCVNLRSLCISKICNIKK 144
           FG   FKC  C   +  +  S+L   L   S +  ++C+NC      C S   +++K
Sbjct: 12  FGSKPFKCEKCS--YSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRK 66


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 346 VFFHPMSSFIKF 311
           +FFHPMSSF +F
Sbjct: 391 LFFHPMSSFREF 402


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 479 LILRKTLKILMYIMIRCN 426
           +IL  TL I+ Y+M+RC+
Sbjct: 5   VILLFTLCIVSYMMVRCD 22


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 724 SKLKXDFVVCAIVLD*GNLYSYTELIYYQGIAQ*KATYYIIL 599
           SK++    V  + +  GNL+ +  L Y  G       Y+I L
Sbjct: 24  SKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIAL 65


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 724 SKLKXDFVVCAIVLD*GNLYSYTELIYYQGIAQ*KATYYIIL 599
           SK++    V  + +  GNL+ +  L Y  G       Y+I L
Sbjct: 77  SKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIAL 118


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 311 FGLVLFKCLLCLDYFHSLESSILYCK 234
           +G  ++KC LC + F S ++  L+ K
Sbjct: 255 YGEKVYKCTLCHETFGSKKTMELHIK 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,070
Number of Sequences: 438
Number of extensions: 4416
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)