Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i01f
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.11 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   4.1  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    26   5.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   5.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   7.1  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 396 HASGCDPDVTTTI-TDNVNKILVIDQESRIVIACGSIAQG---SCHKYKLGDLSTEPEFV 563
           H  G   DVT ++  D++  + VI+ ++  +I  G        SC KY L ++S + EFV
Sbjct: 453 HLDGVVEDVTESLFLDDIKALYVINYQNTFIIITGKSIYAVTPSCTKYNLLEVSGDEEFV 512


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 634 H*TDLMFFMLEQHLQTKENTGMMYLQ 711
           H + L+ FMLE+H   KE + M +L+
Sbjct: 846 HKSSLINFMLEKHTNLKEESSMYWLR 871


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 291 HLFCPLLNGKTGTFHSLK 238
           H  CP++NG   TFH L+
Sbjct: 127 HASCPVINGLCDTFHPLQ 144


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 414 PDVTTTITDNVNKILVIDQESRIVI 488
           PD++   +D + K+LV+D + R+ +
Sbjct: 333 PDISDVASDLIKKLLVLDPKDRLTV 357


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 327 QLSPDLKPIHVVKTGPKPDNPMCHASGCDPDVTTTITDNVNKILVIDQESRI 482
           +L PD  P  +  T  KP+ P   A      V + + DN++++   D  S +
Sbjct: 554 ELFPDFDPDRITTTIEKPERPSRFARRLSSSVASDV-DNLSQLHDTDLNSEV 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,949
Number of Sequences: 5004
Number of extensions: 61653
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)