Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i01f
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0473 + 19474784-19474792,19475707-19476519,19476892-194769...    29   3.2  
12_01_0043 + 344084-344452,346672-347546,347635-348145                 29   4.2  
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34...    29   4.2  
01_05_0436 + 22134275-22134387,22134481-22135249,22137024-221370...    28   9.8  

>12_02_0473 +
           19474784-19474792,19475707-19476519,19476892-19476963,
           19478379-19478594
          Length = 369

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = +3

Query: 321 LHQLSPDLKPIHVVKTGPKPDNPMCHASGCDPDVTTTITDNVNKILVIDQESRIVIACGS 500
           + QL  D    HV+ TG K +     +    P    T  DNV K +V   E  +V+    
Sbjct: 76  VQQLGQDHHHTHVLDTGDKAEESTISSVSGTPVEIFTDKDNVEKGVV---EDTVVVEAAV 132

Query: 501 IAQGSCHKYKLGDLSTEPEFVAVSVAANDAEAST 602
           + Q + +   +     +     V+++A + EA+T
Sbjct: 133 VEQLASNAGIVAQELVDTNVAIVAISAPENEATT 166


>12_01_0043 + 344084-344452,346672-347546,347635-348145
          Length = 584

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 793 YFTSICSILCLENVSCAS-PSVIKFRLEIAGTSCLYSPLFVNVV 665
           +F ++C +LC+ + S ++ P  +   +   G S  +  LF N +
Sbjct: 137 WFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANAL 180


>11_01_0044 +
           340486-340854,341855-341911,343100-343974,344065-344398,
           345553-345645,345913-346062
          Length = 625

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 793 YFTSICSILCLENVSCAS-PSVIKFRLEIAGTSCLYSPLFVNVV 665
           +F ++C +LC+ + S ++ P  +   +   G S  +  LF N +
Sbjct: 156 WFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANAL 199


>01_05_0436 +
           22134275-22134387,22134481-22135249,22137024-22137086,
           22137375-22137755,22137900-22138001
          Length = 475

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +3

Query: 258 QFYHLAVDKISGQVYAGSLNWLHQLSPDLKPIHVVKTGPKPDNPMCHASGCDPDVTTTIT 437
           Q YH+  ++   +    S + L  L P    ++ V     P N + H +G D    TT+ 
Sbjct: 264 QLYHMMSERKRREKLNDSFHTLRSLLPPCSKLYTVFEW-LPGNNLFHGNGSDNKDKTTVL 322

Query: 438 DNVNKIL 458
            N  K L
Sbjct: 323 INAAKYL 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,216,935
Number of Sequences: 37544
Number of extensions: 362767
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)