Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19i01f
         (793 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   2.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    21   4.9  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 393  CHASGCDPDVTTTITDNVNKILVIDQESRIVIACGS 500
            CH+SGC+   +     N N IL++     ++  CGS
Sbjct: 1149 CHSSGCERPFSVQKIPNSNLILLVVD---VLCPCGS 1181


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 21.4 bits (43), Expect(2) = 4.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 IHVVKTGPKPDNPMCHAS 404
           +HV    P PD P C  S
Sbjct: 941 LHVFGFAPSPDCPRCAGS 958



 Score = 20.6 bits (41), Expect(2) = 4.9
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 243 KNETYQFYHLAVDKISGQVYAGSLNWLHQLSPDLK 347
           K  + Q +    D ++    +  L W H+  PD++
Sbjct: 879 KETSLQLWQQQWDDVAANNTSRYLRWAHRQVPDVR 913


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,662
Number of Sequences: 2352
Number of extensions: 15464
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)