Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h17r
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    31   0.29 
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.7  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   6.2  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   8.2  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 403 ISENAVHQGPPPTRIYKSSHYI-WNHMIFGFL 311
           +   A+ QGP  T+ +   HY  W HMI+GFL
Sbjct: 274 VMARALSQGPIVTKSWHYFHYSEWLHMIYGFL 305


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 399 VRMQYTKVHLQRASIKAVT 343
           +RM+YT  H  RASIKAV+
Sbjct: 207 LRMRYTNSHFTRASIKAVS 225


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 401 YVFIWLFFTMVWWVILYSHGDLTENHMPHANISTEWK 511
           Y+  W +FT +  V++    +   NH   ANIS  WK
Sbjct: 234 YIKFWAYFTFIASVLVCFWDE--SNHQEIANISDMWK 268


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 469 REPHASRKYLYRMEAMRKRNLWVYFDFPLQHRNSHDH 579
           R P  +     +   + +R+L  YF FP  HRN+H H
Sbjct: 256 RRPSLTYSPKRQSTGLHRRSLTNYFKFP--HRNAHQH 290


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 292 REPREIKEI-QISCDSRCSDCFYRCALEVDLGVLH 393
           +EP+++ EI  +S D++CS C       +DL  +H
Sbjct: 102 KEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSVH 136


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 577 GRVNFYAEEENRSKPINFAYAWLPFCRD 494
           G  + Y + +    P+NF + WLP  R+
Sbjct: 199 GFADLYHDLDQGFSPVNFVFPWLPLPRN 226


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 664 PVVHSGYRICEINKTEKSSENSNIL*AC 747
           P  H+ +R C + KT K +   NIL  C
Sbjct: 853 PCQHAFHRSCMLEKTYKLASEKNILKEC 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,523,812
Number of Sequences: 5004
Number of extensions: 74615
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)