Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h17f
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   3.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.9  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   9.1  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 548 TLQGKSCGDIGLFKSLIITERGKVTLST 465
           +LQ   C D+GL    + T+   VTLST
Sbjct: 396 SLQRNDCRDVGLILLALATDTENVTLST 423


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 PHLRKAR*RIEHRHVLFVSKFKSCYKIVEGSGLNITV 431
           PH++K+  ++   H   V  ++SCYK+ +   +++ +
Sbjct: 741 PHMKKSISKLLADHQSQVQLYQSCYKLFKNESISMAI 777


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 535 FPCNVTRFSLHWLTCGFYNTFKNYNYF 615
           F    T  S+H +T GFYNT     YF
Sbjct: 157 FVPTTTESSIHPITTGFYNTTFTTGYF 183


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 141 KGQFDANSKILSRLDTDLQSCTTQLTALKLLVSSLQIRMSAMQTMY 278
           K QF+    IL +   DLQ    +LT   + V  L  ++  + T Y
Sbjct: 108 KSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQY 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,029
Number of Sequences: 5004
Number of extensions: 61459
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)