Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h17f
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33...    29   3.1  
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    29   3.1  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    29   4.1  
12_01_0197 + 1456296-1456668,1456930-1458746                           29   5.4  
07_03_0571 - 19602755-19603831                                         29   5.4  
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939...    28   7.2  
02_02_0403 - 9866122-9867231                                           28   7.2  

>11_01_0043 +
           328272-328753,329233-329298,330082-330253,330357-330565,
           330779-330937,331279-331627
          Length = 478

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 529 QDFPCNVTRF-SLHWLTCGFYNTFKNYNYFKPRFQDV--ISR*REKRTIFIDDMHNRNR 696
           Q   CN+ R    +W T  +      + +FK RF     + + R KR +F+ D  NRN+
Sbjct: 153 QPHGCNLPRVPGANWKT--YREKSVGFEFFKQRFNATKFLEKLRNKRLVFVGDSVNRNQ 209


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 153 DANSKILSRLDTDLQSCTTQLTALKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHPHLR 332
           +  S+IL  L     SC     AL+   S L  RMSAM +  R+  E+   + + +   R
Sbjct: 289 ETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTR 348

Query: 333 KA 338
           +A
Sbjct: 349 QA 350


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 475 VTLPLSVIIND---LNKPMSPQDFPCNVTRFSLHWLTCGFYNTFKNYN 609
           + LPLS   +D   L   +  +++  N+ + S    +CGFYN    YN
Sbjct: 337 LALPLSAATHDILPLKSSLFVEEYETNILQSSDGTFSCGFYNITNAYN 384


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 475 VTLPLSVIIND---LNKPMSPQDFPCNVTRFSLHWLTCGFYNTFKNYN 609
           + LP S   +D   L   +  +++  N+ + S    +CGFYN  K YN
Sbjct: 19  LALPWSAATHDILPLKSSLFVEEYETNILQSSDGTFSCGFYNITKAYN 66


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 231 LVSSLQIRMSAMQTMYRDTMELRKLIVVIHPHLRKAR 341
           L S L  RMSAM +   + +ELRK + +++   R+A+
Sbjct: 306 LASELAARMSAMSSATDNAIELRKNLSMVYNRQRQAK 342


>07_03_1760 -
           29289997-29290377,29290539-29290755,29291152-29293953,
           29294134-29294178,29294274-29294358,29294791-29294875,
           29296429-29296530,29296747-29296851,29296940-29297029,
           29297163-29297258
          Length = 1335

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 547 HCKGNLVGTSVCSSH*LSQ 491
           HC  N+ GT+VCS H + Q
Sbjct: 348 HCISNIAGTTVCSDHHVHQ 366


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 153 DANSKILSRLD--TDLQSCTTQLTALKLLVSSLQIRMSAMQTMYRDTMELRKLIVVI 317
           DA + ILSRL+   DL       TAL+ LV+ L   +   + MY D ++ R+   V+
Sbjct: 184 DAMAAILSRLEDGEDLMVVECTCTALRRLVAELDAVL--WKPMYEDVVDARRFAGVV 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,120
Number of Sequences: 37544
Number of extensions: 339037
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)