Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19h17f
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 105 3e-23
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 93 3e-19
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 29 2.8
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 29 2.8
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 29 2.8
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 8.5
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 8.5
AC024796-2|AAK29892.2| 446|Caenorhabditis elegans Hypothetical ... 28 8.5
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 105 bits (253), Expect = 3e-23
Identities = 45/107 (42%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Frame = -1
Query: 717 ENVPFIFPISVVHVIDENSPFFTLSANDILKSRLEVVVVFEGVIESTGQPVQAKSSYIAR 538
+ V I+PI++ H IDE SP + + A+D+ ++ E++ + EGV+ES G QA++SY+
Sbjct: 297 DRVFVIWPITICHEIDERSPLWEIGADDLKSAKFEIIAILEGVVESVGSTTQARTSYLPS 356
Query: 537 EILWGHRFVQVIDYHRERQGYVVNFSKFDETIRINSPLCS-AQILRL 400
EILWGHRF +++ Y +E Y ++F KF +N+P CS A+I RL
Sbjct: 357 EILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSVNTPTCSAAEIERL 403
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 92.7 bits (220), Expect = 3e-19
Identities = 35/105 (33%), Positives = 64/105 (60%)
Frame = -1
Query: 732 SVNSAENVPFIFPISVVHVIDENSPFFTLSANDILKSRLEVVVVFEGVIESTGQPVQAKS 553
S+ + + ++P ++ HVID SP + + ++ ++ E++V+ EG++ESTG QAK+
Sbjct: 286 SIADDDRLFLVWPTTLCHVIDSRSPLYNYNQQTLMSAQFEIIVLLEGIVESTGMTAQAKT 345
Query: 552 SYIAREILWGHRFVQVIDYHRERQGYVVNFSKFDETIRINSPLCS 418
SY+ E+LWGHRF +++ Y R Y +++ F T + +P S
Sbjct: 346 SYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFHSTYPVRTPAMS 390
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/94 (37%), Positives = 65/94 (69%)
Frame = -1
Query: 717 ENVPFIFPISVVHVIDENSPFFTLSANDILKSRLEVVVVFEGVIESTGQPVQAKSSYIAR 538
+ V ++PI V HVI+E+SP + +S +I+K+ E+++ EG++E+TG QA++S++
Sbjct: 256 DRVLLLWPIIVRHVINEDSPLYGMSRENIVKADFELIMTVEGIVEATGMTFQARTSFLPD 315
Query: 537 EILWGHRFVQVIDYHRERQGYVVNFSKFDETIRI 436
EILWG++F ++ + + Y V++S FD+T R+
Sbjct: 316 EILWGYKFKPMVLMNEKLSKYEVHYSFFDQTERV 349
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 222 LKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHPH 326
L+ ++SS Q ++S M Y D ELR L+ +I P+
Sbjct: 813 LRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPY 847
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 222 LKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHPH 326
L+ ++SS Q ++S M Y D ELR L+ +I P+
Sbjct: 813 LRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPY 847
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 222 LKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHPH 326
L+ ++SS Q ++S M Y D ELR L+ +I P+
Sbjct: 813 LRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPY 847
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 192 LQSCTTQLTALKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHP 323
+++ QL L LV + + +T +D ELR+ I+ +HP
Sbjct: 486 METMERQLAGLSNLVHTALVSKGMSETTQKDMAELRREILSMHP 529
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 192 LQSCTTQLTALKLLVSSLQIRMSAMQTMYRDTMELRKLIVVIHP 323
+++ QL L LV + + +T +D ELR+ I+ +HP
Sbjct: 385 METMERQLAGLSNLVHTALVSKGMSETTQKDMAELRREILSMHP 428
>AC024796-2|AAK29892.2| 446|Caenorhabditis elegans Hypothetical
protein Y48G1C.4 protein.
Length = 446
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +2
Query: 398 NSRRIWAEHNGELMRMV-SSNF 460
+++ +WAEHN +LM ++ SSN+
Sbjct: 358 HAKGLWAEHNNQLMTLIGSSNY 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,716
Number of Sequences: 27780
Number of extensions: 336486
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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