Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h14r
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.28 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.28 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   5.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   7.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 307 LSTVKHTLNLQSLIDFQKWRTELETIAVVKILIIAQKNLAL 185
           ++ +   L+L  L+D Q WR     I +  +++  +K+LAL
Sbjct: 277 IANLNFILHLFCLLDVQ-WRIPFNGIQMPNLMVFYEKSLAL 316


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 46   PFVNHHIILNLKP 8
            PFV++H ILNL+P
Sbjct: 1040 PFVSNHDILNLRP 1052


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 136 WYLQLLFGRPF*CYLPMDF 80
           W + L+F  PF  Y+ +++
Sbjct: 158 WLIALIFAMPFATYVDINY 176


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 31   DDLQKD---MTWLEPPREYQN 84
            DDL +    +TW  PPRE  N
Sbjct: 986  DDLDQHTLKVTWKPPPREDWN 1006


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 286 LNLQSLIDFQKWRTELETIAVVKILIIAQK 197
           L+  SL +FQ+ R  LET   +++ ++ ++
Sbjct: 199 LSSYSLTEFQQRRAFLETRQSLEVQLVIEE 228


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 TFENLLKIANLVCVL 297
           TFEN+L   N V VL
Sbjct: 262 TFENILSHINTVYVL 276


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 293 THTKFAIFNRFSKVEDRIRDNSC 225
           TH K +  NR        R NSC
Sbjct: 388 THLKVSGINRVGSTRRPSRRNSC 410


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 TFENLLKIANLVCVL 297
           TFEN+L   N V VL
Sbjct: 262 TFENILSHINTVYVL 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,356
Number of Sequences: 438
Number of extensions: 1697
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)