Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h14f
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   0.67 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   4.7  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   4.7  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    24   8.2  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   IKHSKTHTKFAIFNRFSKVEDRIRDNSCSKDFDHCPKKSSATHIAVTNL 148
           ++ +K HT   I   FSK   R   N   K F    +++++  +A TNL
Sbjct: 76  LRDTKIHTSLPITTPFSKKRAREAKNILLKPFKSPLRQTASPQVADTNL 124


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 186 TVNTSLVIILYCYKFVTAICV 124
           T+  S ++IL CY FV+ IC+
Sbjct: 715 TLIFSSLLILACYAFVSLICM 735


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 142 CDSYMCSARFFWAMIKIFTTAIVSNSV 62
           C +   SA +FW  +  F T  ++NS+
Sbjct: 373 CAAVATSANWFWNFLISFFTPFITNSI 399


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 SRGGSSQVISFCKSSYNLKFKTCIFLYVPIN 328
           +RG    ++SF +S+  +    C   +VPI+
Sbjct: 202 NRGEFKDIVSFYESNNGIAISHCSHAFVPIS 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,097
Number of Sequences: 5004
Number of extensions: 25749
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)