Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h14f
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    27   3.9  
AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical ...    27   5.2  
AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical ...    26   6.9  
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
           (imitation swi) homologprotein 1 protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 2   IKHSKTHTKFAIFNRFSKVEDRIRDNSCSKDFDHCPKKSSATHIAVTN-L*QYNI--MTK 172
           +K  +  ++  IF++FS++ D + D    + +++C    S  H   +N +  YN     K
Sbjct: 445 MKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKK 504

Query: 173 LVFTVTFRS 199
            +F +T R+
Sbjct: 505 FIFMLTTRA 513


>AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical
           protein C36C5.5 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 35  IFNRFSKVEDRIRDNSCSKDFDHCPKK 115
           I N F +  D++ +N C KD+D   +K
Sbjct: 113 IANDFEECRDKLAENKCYKDWDPFQRK 139


>AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical
           protein Y60C6A.1 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 142 CDSYMCSARFFWAMIKIFTTAIVSNSVL 59
           CDS+ C+ R +W++I +    I+  S+L
Sbjct: 103 CDSFDCAQRDYWSVIFMILALILLLSLL 130


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 5   KHSKTHTKFAIFNRFSKVED---RIRDNSCSKDFDHCPKKSS 121
           K++K   +  + N+  +V +    +   SC+++  HCP KS+
Sbjct: 673 KYAKRFVENMVINKSKEVAEWYLHVNSKSCNQNDVHCPAKST 714


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 5   KHSKTHTKFAIFNRFSKVED---RIRDNSCSKDFDHCPKKSS 121
           K++K   +  + N+  +V +    +   SC+++  HCP KS+
Sbjct: 673 KYAKRFVENMVINKSKEVAEWYLHVNSKSCNQNDVHCPAKST 714


>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +2

Query: 173 LVFTVTFRSTVLMLFTYGF*YSRGGSSQVISFCK 274
           L++  ++  ++  + TYG    +G ++ ++SFC+
Sbjct: 87  LIYNQSWLGSIFFVITYGGRCIQGATAAILSFCR 120


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 166 HNIILLQVCDSYMCSARFFWAMIKIFTTAI 77
           H  +L+ VC  ++ SA F+W M   FTT +
Sbjct: 477 HWSVLIFVCSIWVISASFYWIM---FTTIL 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,793,292
Number of Sequences: 27780
Number of extensions: 142395
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)