Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h14f
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.36 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LSTVKHTLNLQSLIDFQKWRTELETIAVVKILIIAQKNLAL 125
           ++ +   L+L  L+D Q WR     I +  +++  +K+LAL
Sbjct: 277 IANLNFILHLFCLLDVQ-WRIPFNGIQMPNLMVFYEKSLAL 316


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 264  PFVNHHIILNLKLVS 308
            PFV++H ILNL+ +S
Sbjct: 1040 PFVSNHDILNLRPLS 1054


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 174 WYLQLLFGRPF*CYLPMDF 230
           W + L+F  PF  Y+ +++
Sbjct: 158 WLIALIFAMPFATYVDINY 176


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = -2

Query: 279  DDLQKD---MTWLEPPREYQN 226
            DDL +    +TW  PPRE  N
Sbjct: 986  DDLDQHTLKVTWKPPPREDWN 1006


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 24  LNLQSLIDFQKWRTELETIAVVKILIIAQK 113
           L+  SL +FQ+ R  LET   +++ ++ ++
Sbjct: 199 LSSYSLTEFQQRRAFLETRQSLEVQLVIEE 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,811
Number of Sequences: 438
Number of extensions: 2223
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)