Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h06r
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   402   e-113
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   204   2e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   195   8e-51
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...   124   2e-29
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...   108   1e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...   101   1e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    94   3e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    71   2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    43   5e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   2.0  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   3.4  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   4.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  402 bits (990), Expect = e-113
 Identities = 187/213 (87%), Positives = 200/213 (93%)
 Frame = -3

Query: 857 VPIYEGYXXPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 678
           VPIYEGY  PHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALD
Sbjct: 163 VPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALD 222

Query: 677 FEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSI 498
           FEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE  YNSI
Sbjct: 223 FEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSI 282

Query: 497 MKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIG 318
           MKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIG
Sbjct: 283 MKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIG 342

Query: 317 GSILASLSTFQQMWISKEEYDESGPGIVHRKCF 219
           GSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 343 GSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  204 bits (497), Expect = 2e-53
 Identities = 94/213 (44%), Positives = 141/213 (66%)
 Frame = -3

Query: 857 VPIYEGYXXPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 678
           VPIY+G+  P AI + ++ GRD+TDYL   L + G+   ++AE+EIVR+IKEK CYVA D
Sbjct: 168 VPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASD 227

Query: 677 FEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSI 498
           F  E+ +         +Y+LPD Q IT+G E F  PE LF P  +G E+ G+H  ++ SI
Sbjct: 228 FRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSI 287

Query: 497 MKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIG 318
           +  D+D+R  LY+N V+SGG+T+  G  +R   E+ A++    ++KI A PER ++ W+G
Sbjct: 288 LLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLG 347

Query: 317 GSILASLSTFQQMWISKEEYDESGPGIVHRKCF 219
           GSILASLSTF+++ I+ EEY ++   ++ R+ F
Sbjct: 348 GSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  195 bits (475), Expect = 8e-51
 Identities = 96/216 (44%), Positives = 142/216 (65%), Gaps = 12/216 (5%)
 Frame = -3

Query: 857 VPIYEGYXXPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 678
           VP+YE     H + RLD+AGRD T YL+ +L  +GY+F  TA+ E VR++KEKLCYV+ D
Sbjct: 163 VPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYD 222

Query: 677 FEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSI 498
            E +   +  +T L ++Y LPDG+VI +G+ER+ CPE LFQP  +G E  G+ E ++++I
Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTI 282

Query: 497 MKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIA 351
              DVDIRK LY   V+SGG++MY G+  R++KEI  L         P+ +   K+KI  
Sbjct: 283 QAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIED 342

Query: 350 PPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 246
            P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct: 343 APRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score =  124 bits (298), Expect = 2e-29
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
 Frame = -3

Query: 749 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 570
           S+    +R ++ + KE +  V    +     A AS+   K +E PDG     G ERFR  
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299

Query: 569 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 417
           E LF PSF    S          G+HE VY SI+ CD ++R  L  N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359

Query: 416 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 246
           ++R+Q E+  LA  S I +           +VW GGSILASL  FQ +W+SK+EYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score =  108 bits (259), Expect = 1e-24
 Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 20/231 (8%)
 Frame = -3

Query: 857 VPIYEGYXXPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 678
           +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV +IKE +CYV+ +
Sbjct: 171 IPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQN 228

Query: 677 FEQEMATAAAS--TSLEKSYELPD------------------GQVITIGNERFRCPEALF 558
           F+++M        + LE  Y LPD                   QV+ + NERF  PE LF
Sbjct: 229 FKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLF 288

Query: 557 QPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP 378
            PS + +   GI E V  S+     +I+  L  N V  GG   +PG   R+  E+ +LAP
Sbjct: 289 SPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAP 348

Query: 377 STIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 225
           +  ++K+  P +     W   S +  L  +    I++ EY E G  I+ RK
Sbjct: 349 ANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score =  101 bits (243), Expect = 1e-22
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 21/231 (9%)
 Frame = -3

Query: 857 VPIYEGYXXPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVA 684
           +P+ EGY    +I  + LAGRD+T ++  +L +R    S   TAER     IKE+ CYV 
Sbjct: 194 IPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVC 248

Query: 683 LDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGMESCG-IH 519
            D  +E +         L+ + E   G   TI  G ERF  PE  F P     +    + 
Sbjct: 249 PDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLP 308

Query: 518 ETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI---------- 369
           E V N +    +D+RK LY N V+SGG+T++    +R+Q+++  +    I          
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368

Query: 368 ----KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 228
                + +I+   ++ +VW GGS+LA    F     +K +Y+E G  I  R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
 Frame = -3

Query: 527 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 348
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P + ++KI A 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384

Query: 347 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 222
               ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G     ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/115 (27%), Positives = 62/115 (53%)
 Frame = -3

Query: 587 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 408
           E+ R PE +F PS +G++  GI E + + + +  ++ ++ L +N +++GG    PG+  R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653

Query: 407 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 243
           +++E+T++ P    I +          W G S  +    F+   +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = -3

Query: 473 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 303
           K+LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I  
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586

Query: 302 SLSTFQQMWISKEEYDESGPGIVHRK 225
            +    ++WI   ++   G  ++  K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 326 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 225
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 401 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 291
           KEI++ A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 850 STKVTXCPTPSSVWTW 803
           STK   CP PS  W W
Sbjct: 52  STKTATCPDPSWEWAW 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,886
Number of Sequences: 5004
Number of extensions: 55847
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)