Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h04r
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    38   0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    30   0.48 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.83 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   4.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.9  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 849 PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 673
           PQ ++ ED+   F+ +G + +C +MN  GFV ++    A   +       F G  I VE
Sbjct: 13  PQATR-EDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = -2

Query: 837 KPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTEEQAAAAIRALHNSTFNGGVIS 679
           KP+ L   F +FG V E  I  +     CG  FV M+  + A  A+ +L+ +  +G  I+
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179

Query: 678 VE 673
           V+
Sbjct: 180 VD 181


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 354 EGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 217
           E   R+D+PP         A+   P P    P+G +Y+   P P Y
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAY 277


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 766 RVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAW 641
           RV A A    S SS ++A  +    R H R  R H      W
Sbjct: 292 RVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVW 333


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 825 LRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIRALHNSTF 697
           LR +FERFG V    I+N   R GF+ M   + A  A  A+ N  F
Sbjct: 422 LRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 828 DLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 673
           +L K+F+ +G + +  +    GFV   T E  A A+ A   +   G  + +E
Sbjct: 379 NLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKLHLE 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,703
Number of Sequences: 5004
Number of extensions: 57911
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)