Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19h01f
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 164 LRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLTHGGLGSTFAAFD 343
           LRS   VR +    ++    + + T     A+  RE+ A Q  S     G +  TFA F 
Sbjct: 15  LRSSQVVRMAAPRHFSQSAKVLSVTPELQQALN-REIEAEQQLSSDNLQGAVAPTFAGFQ 73

Query: 344 ITN 352
           +TN
Sbjct: 74  VTN 76


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 388 NFHPVVQSPAGCVRNVKSGKGGTESAVS----KPDRTGL*CPNFSSAYGVDASTGRRKQS 221
           +F P     +GC+    +G  G  S V     + D  G+  P F S YG+DAS G++K+S
Sbjct: 346 SFMPYSLQISGCLEVTINGCAGILSEVFERKIRKDVPGV--PGFISVYGMDAS-GKKKKS 402


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 388 NFHPVVQSPAGCVRNVKSGKGGTESAVS----KPDRTGL*CPNFSSAYGVDASTGRRKQS 221
           +F P     +GC+    +G  G  S V     + D  G+  P F S YG+DAS G++K+S
Sbjct: 346 SFMPYSLQISGCLEVTINGCAGILSEVFERKIRKDVPGV--PGFISVYGMDAS-GKKKKS 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,961
Number of Sequences: 27780
Number of extensions: 259524
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)