Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g24r
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         56   7e-09
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    26   6.1  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.1  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   8.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   8.1  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = -1

Query: 322 VCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYLLANVL 203
           + GAW GA  IPLDW+ PWQ WPI   +GA  GY  A ++
Sbjct: 459 IIGAWFGAFPIPLDWDRPWQAWPITIVIGAFLGYAFAAIV 498


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -3

Query: 335 CHANR--MRRMAGGCSDTPGLEYSMAAVADSLLPWSYRWLLAG*CI--DSIQSNLNDSGL 168
           C A R  M+R+ GGC+   G++  + A+++S    SYR  L G  +  D +++   ++  
Sbjct: 237 CLAERALMKRLQGGCAIPIGVQTDVLAISNS----SYRISLLGTVLSADGLRAAFGNAEA 292

Query: 167 QISSSQ 150
            +SS +
Sbjct: 293 VVSSEE 298


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 312 APHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKS 491
           A  T+S  +++S S + + +   TP++S    S+   S    I S + S  + + SS  S
Sbjct: 125 AASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVS 184

Query: 492 NTGAPKS 512
           ++ A  S
Sbjct: 185 SSSASSS 191


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 364 DTVVEMLV--NNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYL 239
           DT VE+    +N  LT+ G     + +  +W  P ++W + C L
Sbjct: 134 DTSVEVAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWKVGCKL 177


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 728 YNSHNTRQVNTCNKA*Y 778
           Y+SH+ +QVN CN + Y
Sbjct: 226 YHSHSVKQVNFCNDSPY 242


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -1

Query: 835  YRYTKMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYY 704
            + Y+KM     +   R ++I SL  C+   ++ +  +  GS++Y
Sbjct: 1513 HEYSKMLNLGIEASWRSLSIDSLKKCLSKSNLESFEAKLGSIFY 1556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,777
Number of Sequences: 5004
Number of extensions: 71096
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)