Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g24f
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    59   4e-09
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    56   3e-08
04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941     34   0.14 
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    31   0.74 
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    31   1.3  
05_07_0176 - 28168595-28169806                                         29   3.9  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   5.2  
10_05_0032 - 8361039-8361314                                           28   9.1  

>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +1

Query: 517 GVECSMQLLFGVKSFARDTVVEMLVNNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLG 696
           G +C           + D+V  M+   A   V GAWLGA  +PLDW  PWQ+WPI    G
Sbjct: 148 GTKCECHFWSSNYCGSTDSVDYMISAPAHGAVIGAWLGAWPMPLDWERPWQEWPISVTYG 207

Query: 697 AIGGYLLANVLTV 735
           ++ G+L+   +++
Sbjct: 208 SVAGHLIGMAISL 220


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +1

Query: 610 VCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYLLANVLTV 735
           V GAWLGA  +PLDW  PWQ+WPI    G++ G+L+   +++
Sbjct: 110 VIGAWLGAWPMPLDWERPWQEWPISVTYGSVAGHLIGMAISL 151


>04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941
          Length = 243

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 641 ITTAPSHAPHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIVKSVDN- 465
           + TAPS  P TV+MAL ++ S  + L  + +  +  +       +   + VS +  +D  
Sbjct: 25  MATAPSRLPATVAMALISTPSAAIRLTPINSVTHFDVLRLRARRTDGEDDVSALPEIDGA 84

Query: 464 INVSSCKSNTGAPKSIIP 411
            +   C ++T +P+S +P
Sbjct: 85  ASALPCTASTASPRSCVP 102


>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -1

Query: 659 VFQSRGITTAPSHAPHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIV 480
           VF    +    + AP+ VSM  F    T + L +     + C+  S      R  + SI+
Sbjct: 324 VFGCDKLKLIENEAPN-VSMFAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIM 382

Query: 479 KSVDNINVSSCKSNTGAPK 423
            +++++ + SCK    APK
Sbjct: 383 PNLESLALKSCKETAFAPK 401


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 678 DSLLPWSYRWLLAG*CIDSIQS 743
           D+LLPWS +  LA  CIDSI S
Sbjct: 149 DALLPWSEQLKLAARCIDSIAS 170


>05_07_0176 - 28168595-28169806
          Length = 403

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 601 MLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGG 708
           M  VCGAW  AV + +    P +   +PC L   GG
Sbjct: 32  MAGVCGAWRRAVKVKVATGQPPRPRQLPCLLRPNGG 67


>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
            26387554-26387685,26387759-26387857,26387956-26388127,
            26388217-26388512,26388601-26388726,26388848-26389062,
            26389154-26389225,26389299-26389368,26389441-26389517,
            26389605-26389923,26390034-26390225,26390321-26390551,
            26390585-26390950,26392251-26392313,26392394-26392456,
            26392544-26392642,26393497-26393523,26394299-26394358,
            26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 258  QNIKRRSFAHIVERPSIRYNSHNT 187
            QN+K+R F  ++  P + Y  H+T
Sbjct: 1297 QNVKKRRFDDVINSPDVEYFGHST 1320


>10_05_0032 - 8361039-8361314
          Length = 91

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 652 SPGVSLQPPAMRRIRLAWHYSLASRPLC 569
           S  V   P  + R+ LAWH+ LAS   C
Sbjct: 9   STAVGADPLPLPRLALAWHHPLASASPC 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,956,939
Number of Sequences: 37544
Number of extensions: 381226
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)