Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g24f
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain (p...    29   3.5  

>Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical
           protein W04A8.1 protein.
          Length = 667

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = -1

Query: 596 LFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSI 417
           LFTSIST+ +L +  +     +EH  P     GN    V+  +N   ++     GA K  
Sbjct: 303 LFTSISTSSTLRRRRSFTGFVLEHREP-----GNAALEVQEANNDVRNTWNPELGAKKP- 356

Query: 416 IPIKKQKLTPRRNTNDLRTSLA 351
              +K +  P++  ND+R ++A
Sbjct: 357 ---RKTRKAPQKTVNDMRKTMA 375


>U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 8 protein.
          Length = 813

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 126 YPIRITSNNNIKPYYMYLLA*YCD-CY 203
           Y  +I   +N KPY +Y+ + YC  CY
Sbjct: 131 YQFKILEESNTKPYIVYIYSNYCQMCY 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,771,839
Number of Sequences: 27780
Number of extensions: 350925
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)