Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19g20f
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical p... 74 6e-14
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 32 0.22
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 32 0.22
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 30 0.89
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 29 2.1
U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical pr... 28 3.6
AC006674-13|AAF39942.1| 281|Caenorhabditis elegans Hypothetical... 28 3.6
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine re... 27 6.3
Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical
protein Y57G11C.12b protein.
Length = 131
Score = 74.1 bits (174), Expect = 6e-14
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 86 KTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQC-REKLKELFIKNKHV 262
+TV P+ S++ AEAR VL+ YK + R P D+ + R +K+ F KN H+
Sbjct: 17 RTVAPIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHDMPLGVFRAVIKKQFTKNGHL 76
Query: 263 TDIRVIDMLVIKGQMELKESVNIWKQKGHIMAY-FKPTEEPKPKNFLSKFFSGNE 424
TD+RV+D LV + +K + H+ Y F E KPK+FLSKF +G E
Sbjct: 77 TDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLFAENVEAKPKDFLSKFLNGKE 131
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -2
Query: 343 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 179
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 99 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 157
Query: 178 IGDLT 164
+ T
Sbjct: 158 FNETT 162
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -2
Query: 343 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 179
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 92 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 150
Query: 178 IGDLT 164
+ T
Sbjct: 151 FNETT 155
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 30.3 bits (65), Expect = 0.89
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = -2
Query: 391 FWFRFFCWFEVGHNVPLLFPYVHRLF---QLHLTLNNQHINDSNISHMFVLNEEFFQFLS 221
F F F WFE + L++PY + L H+ N +D I ++
Sbjct: 67 FSFYFGAWFECWLGLVLVWPYKNGLVLVEDTHMKFTNFETSDRTIM------AHITKYPE 120
Query: 220 TLCF*LGNVIILHYIGDLTI-PCFVKTQNSIPSF 122
T C G+ +I HY+ C + +I SF
Sbjct: 121 TTCLLFGSFLIWHYLASTVAGMCNFVIERAIASF 154
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 74 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 250
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 251 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 340
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 74 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 250
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 251 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 340
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 74 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 250
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 251 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 340
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical
protein F18E3.10 protein.
Length = 235
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 399 FRNSFLETNDLFIYFVHILKLLNL 470
FRNSFLE++ Y +HIL + +
Sbjct: 5 FRNSFLESDRFLAYALHILSAIEI 28
>AC006674-13|AAF39942.1| 281|Caenorhabditis elegans Hypothetical
protein K12H6.7 protein.
Length = 281
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 368 PTEEPKPKNFLSKFFSGNE*FIYLLCTYLEI 460
P E PK NF+S FF N +Y T+++I
Sbjct: 227 PAERPKEFNFVSTFFPENFNKVYDCSTWMDI 257
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -2
Query: 238 FFQFLSTLCF*LGNVIILHYIGDLTIPCFVKTQNSIPSFSMRRR*YWFYGFCTNFYCLPC 59
FF+ L CF + + LH + I T++S+ F + Y +C+NF+ L
Sbjct: 114 FFKILLIQCFVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSLY--VDYCSNFFSLTV 171
Query: 58 RHFRSESIC 32
S + C
Sbjct: 172 TFLMSLNRC 180
>AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 3 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 357 AIMCPFCFHMFTDSFNSI*PLITSISMTRISVTCLFL 247
AI P FH + DS+ SI L+ +IS++ ++L
Sbjct: 115 AIYTPIMFHKYRDSYPSIIILMLAISLSMFENLLMYL 151
>Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical
protein F26D2.4 protein.
Length = 332
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 396 SFRNSFLETNDLFIYFVHILKLLNL 470
++R+SFLE+++ + Y +H L + +
Sbjct: 4 TYRHSFLESDEFYAYSLHFLSIFQI 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,352
Number of Sequences: 27780
Number of extensions: 239395
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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