Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19g16f
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 52 7e-08
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 35 0.011
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 29 0.94
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.94
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 2.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 3.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.6
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.6
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 52.4 bits (120), Expect = 7e-08
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 519 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 698
FP E + + K++LL++ +FAP AF + EGK R A +L A++ P L+AN+
Sbjct: 94 FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANY 153
Query: 699 KWLTLFQVINLAFIP 743
FQ +N +P
Sbjct: 154 MVWPFFQTVNFWLMP 168
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 35.1 bits (77), Expect = 0.011
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +3
Query: 495 FYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALY 674
++ + + E+ + ++ L++ IFAPL F + E K++ Y
Sbjct: 109 WFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFFLFMGITECKSYERLKSYFRKHY 168
Query: 675 LPVLEANWKWLTLFQVINLAFIPPML 752
P L+AN+ Q+ N F+P +L
Sbjct: 169 WPTLKANYILWPAVQLFNFTFVPLVL 194
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.7 bits (61), Expect = 0.94
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 519 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 698
F + +++ + ++L F + + ++S +F KT L L ++L +NW
Sbjct: 135 FSKPTSAITCSNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNW 194
Query: 699 KWLTLF 716
KWL F
Sbjct: 195 KWLAYF 200
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 410 RGWRINQT*SYSRIWFLRIIIWWYSSS 490
R W N T ++SRIW + I +WY S+
Sbjct: 328 RSWFHNVT-NFSRIWVMHISAYWYYSA 353
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 483 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 635
+P+ +++++ S SF P A K +E + LM S+Y FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 604 ENACINGAKIKRSNNNFFASGNDADSS 524
ENA N + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 437 SYSRIWFLRIIIWWY 481
++SRIW L I ++WY
Sbjct: 423 NFSRIWILHISVFWY 437
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 263 KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYYKL 373
K+ +N +K DN++ S+I +FT ESY+ L
Sbjct: 669 KYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFFL 705
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 356 ESYYKLRSGYSWQSSIT 406
E YY +RS +SW+ S T
Sbjct: 276 EYYYYIRSSFSWEDSYT 292
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 78 VHNYILSYQKKIKNKILRTYIHTDMYDNFIVHYVRSDRLL 197
+H + LS+ K N+I+R +H D N V ++ SD++L
Sbjct: 1063 IHFHKLSH--KNPNEIIRMILHCDDSMNECVEFLSSDKVL 1100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,191
Number of Sequences: 5004
Number of extensions: 53202
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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