Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19g16f
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133... 61 1e-09
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143... 52 7e-07
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706... 48 6e-06
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 32 0.43
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 30 2.3
05_03_0088 - 8308587-8308649,8308682-8308738,8310403-8310501,831... 29 3.0
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 29 5.2
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215... 29 5.2
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 28 6.9
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 9.2
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 28 9.2
>12_01_0180 -
1335825-1335980,1336584-1336670,1336767-1336859,
1336985-1337057,1337153-1337247,1337917-1338004,
1338135-1338424
Length = 293
Score = 60.9 bits (141), Expect = 1e-09
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +3
Query: 309 LVASYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVP 488
L+A YL L HPI TKA+TS V+ G L Q+ + +LD P
Sbjct: 94 LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKVPKLDLKRTFVFTFLGLVLVGP 153
Query: 489 --HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQL 662
H +Y + +L AS +A +LLL++ IF+P+ + L EGK + +L
Sbjct: 154 TLHVWYLYLSKLVMINGASGAIA-RLLLDQFIFSPIFIGVFMSLLVTLEGKP-SLVVPKL 211
Query: 663 FALYLPVLEANWKWLTLFQVINLAFIP 743
+L + ANW+ FQ +N F+P
Sbjct: 212 KQEWLSSVIANWQLWIPFQFLNFYFVP 238
>11_01_0180 -
1431758-1431838,1431975-1432061,1432180-1432230,
1432275-1432367,1432496-1432568,1432657-1432751,
1433428-1433515,1433647-1433936
Length = 285
Score = 51.6 bits (118), Expect = 7e-07
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Frame = +3
Query: 309 LVASYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVP 488
L+A YL L HPI TKA+TS V+ G L Q+ + +LD P
Sbjct: 94 LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKVPKLDLKRTFVFTFLGLVLVGP 153
Query: 489 --HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAA--LK 656
H +Y + +L AS +A +LLL++ IF+P+ + L EGK LK
Sbjct: 154 TLHVWYLYLSKLVTINGASGAIA-RLLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPKLK 212
Query: 657 QLFAL--------------YLPVLEANWKWLTLFQVINLAFIP 743
Q+ +L + ANW+ FQ +N F+P
Sbjct: 213 QILCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVP 255
>02_02_0131 -
7065762-7065813,7065907-7065992,7066080-7066150,
7066563-7066638,7066977-7067078,7068025-7068123,
7068208-7068339
Length = 205
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Frame = +3
Query: 321 YLQNLYLHPIKTKAITS-CVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVPHYF 497
YL+ L LHP++TK IT+ C+ G + S+A ++ + I + H+
Sbjct: 32 YLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFAYGGPFGHFL 91
Query: 498 YETVERLFPEESASFPLAKKLLLERLIFAPLMQ-AFSLYSLARFEGKTHRAALKQLFALY 674
++ ++ +F + + +AKK+LLE++ +P F Y E + + ++ Y
Sbjct: 92 HKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVKKQY 151
Query: 675 LPVLEANWKWLTLFQVINLAFIP 743
V + W + + IN ++P
Sbjct: 152 PSVQLSAWMFWPIVGWINHMYMP 174
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 318 SYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAG 419
+Y++ L HP++TKAITS V+ +Q ++G
Sbjct: 11 AYMRQLQAHPLRTKAITSGVLAGCSDAIAQKISG 44
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 291 SKPIMNLVASYLQNLYLHPI 350
S+P +NL SYLQN YLHPI
Sbjct: 692 SEPNLNL-KSYLQNAYLHPI 710
>05_03_0088 -
8308587-8308649,8308682-8308738,8310403-8310501,
8311501-8311620,8311715-8311837,8312416-8312471,
8315404-8315451,8315555-8315615
Length = 208
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 353 DESYYKLRSGYSWQSSITDRGWRIN 427
+E+YY+ RS SW S D GW ++
Sbjct: 104 NEAYYRHRSKGSWTLSTADNGWCVS 128
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 227 WVNVILIVFFY*KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYY-KLRSGYSWQSSI 403
W +I F ++N S L +++ + D+SY+ + RS SW S
Sbjct: 389 WETAFIIQAFCATDLVNEYAST-VQRAHEFLKNSQVVRNHPGDQSYWHRHRSKGSWTLSS 447
Query: 404 TDRGWRINQT 433
D GW ++ T
Sbjct: 448 ADNGWAVSDT 457
>02_01_0319 -
2148788-2148892,2149474-2149557,2149643-2149723,
2150303-2150480,2150811-2150954,2151048-2151094,
2151353-2151409,2151566-2151664,2151867-2151989,
2152083-2152205,2152594-2152707,2152972-2153160,
2153412-2153578,2153904-2153988,2155431-2155628,
2155978-2156175
Length = 663
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 227 WVNVILIVFFY*KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYY-KLRSGYSWQSSI 403
W ++I F ++N S + +++ + D+SY+ + RS SW S
Sbjct: 325 WETALIIQAFCATDLVNEYAST-VQRAHEFMKNSQVVRNHPGDQSYWHRHRSKGSWTLSS 383
Query: 404 TDRGWRINQT 433
D GW ++ T
Sbjct: 384 ADNGWAVSDT 393
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 338 FTSD*DESYYKLRSGYSWQSSITDRGWRINQT*SYSRI 451
FT D DE SG + S+ T+RG+R N T +SR+
Sbjct: 245 FTVDRDEDDDDKSSGCTHPSTATNRGFRPNCTAGHSRV 282
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 600 MLALMVQRSNVPIITFLQVGMMQILQ----ETAFQLFHRNSEELYHQIIIRKNQMRE*DQ 433
+ ALM+ +PI ++ + M++ILQ +++H S++ H N+ E Q
Sbjct: 369 LTALMLYSYFIPISLYISIEMVKILQALFINQDIEMYHEESDKPTHARTSNLNE--ELGQ 426
Query: 432 V*LILQPRSVMLDCQL 385
V +L ++ L C +
Sbjct: 427 VDTVLSDKTGTLTCNM 442
>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 351 KTKAITSCVVGTAGSLASQIVAG 419
K+ A+ SC +GT+ +L QI+AG
Sbjct: 1133 KSAAVYSCFLGTSANLRYQIIAG 1155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,602
Number of Sequences: 37544
Number of extensions: 274216
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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