Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g16f
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    34   0.094
U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +3

Query: 537 SFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLF 716
           S  L KKL +++L F+P   A  L++L   + ++   +   L   +  +   + K     
Sbjct: 79  SLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKEDWFNIYATSLKVWPFV 138

Query: 717 QVINLAFIP 743
           QV+NL F+P
Sbjct: 139 QVVNLCFVP 147


>U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical
           protein T05C1.3 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 648 RLYEFFLQIEPKNIEKMLALMVQRSNV 568
           R+Y +FL +E  ++EK+L   V RS +
Sbjct: 128 RVYIYFLDVEMADVEKLLRFNVDRSTI 154


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 409 SWLENQSDLILFSHLVFTDYYLVVQFLTISMKQLKGCFLKNL 534
           S++EN   L +F  L F+ Y+L   FL  S+     C + NL
Sbjct: 295 SYIENAVSLGIFCPLSFSFYFLSYAFLQTSLIACSKCSIFNL 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,641
Number of Sequences: 27780
Number of extensions: 289103
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)