Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g13f
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         29   0.54 
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    27   3.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   5.0  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   5.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.7  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 223 GVDSSHSTDHTNRELVRELAFTRLPS*YNSRTRQGTLA 110
           GV++ HS   T  E+ + L  TR P+  +S+ +  +LA
Sbjct: 227 GVEAGHSMQGTQEEIAKYLGITRGPTKMDSQAKYASLA 264


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 542 WTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQPSTICT 661
           WT   +P+++ WV+   IS    M+    S   +  +ICT
Sbjct: 86  WTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSICT 125


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 129 VLELYQDGRRVKASSLTSSRFVWSVLWEESTPAEPPSF 242
           +L + ++  R  A  LTS  FV S +W  ST   P SF
Sbjct: 113 ILAVARNFNRAVALHLTSVLFVNSGMWSASTSFLPSSF 150


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 242 HSNWGLTAAHCTGL 283
           H+NWG+T A  TGL
Sbjct: 338 HANWGITQAPATGL 351


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = -1

Query: 364 IYVLSGLEKQAGTGQVHCSSSDDDCYTQTGAVSSCKPPVAMNDGGSAGVDSSHSTDHTNR 185
           ++  S LEK AGTG +  S         T   SS  P       G+   DSS     T+ 
Sbjct: 186 VHAPSSLEKPAGTGDLPSSEISTKAPASTTVSSSVDP-------GTINEDSSMKDHTTSN 238

Query: 184 ELVRELAFTRLPS*YNSR-TRQGTLAS 107
           E    L      +  N+  T  GT AS
Sbjct: 239 EQASVLTSANTAASTNTNGTAGGTSAS 265


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -3

Query: 623  CRPPYNADSIFRSRTPSSGSP----EMRFRSRCGPIRWRQV 513
            C  P + +  F ++  S+G+     E+RFRS  G  RW  V
Sbjct: 907  CLLPESLEGTFNNQDESNGTKTFAAEIRFRSTDGHYRWHLV 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,409
Number of Sequences: 5004
Number of extensions: 59598
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)