Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g13f
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836...    30   2.3  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.9  
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405...    28   6.9  
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    28   6.9  

>06_03_0561 -
           22183140-22183185,22183273-22183442,22183554-22183619,
           22183911-22184010,22184072-22184164,22184259-22184352,
           22185029-22185257,22185460-22185556,22187406-22187710
          Length = 399

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 370 RMIYVLSGLEKQAGTGQVHCSSSDDD 293
           R+ Y   GL+K  G G+VH + SDDD
Sbjct: 318 RLGYKSVGLDKGRGKGKVHATPSDDD 343


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 617  AYNFSPTIQPSTI---CTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQ 751
            A NF P +QPST     +L  N+ +Q+ CQ D      V  ++G  TQ
Sbjct: 1956 AQNFQPELQPSTSLFDASLESNNISQTDCQSDRA---VVFLQEGATTQ 2000


>07_03_0804 -
           21639016-21639231,21639379-21639555,21640120-21640588,
           21640608-21641218
          Length = 490

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 734 LHRSLSEDHRCHPGKWTAWCRCNQACKWW 648
           LH    ED RC P   +  C C++  KWW
Sbjct: 413 LHPYHPEDKRCAPCCMSN-CNCHEPLKWW 440


>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 179 QLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGL 283
           ++S  +  +VGGV +   + + + WGL+  HC G+
Sbjct: 13  EISQGLPDSVGGVLSGPVSNVATRWGLSDLHCKGM 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,038,990
Number of Sequences: 37544
Number of extensions: 445949
Number of successful extensions: 1313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)