Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g13f
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    75   5e-14
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    68   6e-12
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    44   1e-04
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    35   0.071
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    29   4.7  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   6.2  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   8.1  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 7/210 (3%)
 Frame = +2

Query: 131 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC--TGLRVT---I 295
           +R+V G+E   G FP+  ++R  +T    + CGA+I+     +TAAHC     RV+   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRNKATKA--HHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 296 IVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRK-LEFNDYIQPIRL 472
           +V     N T      E   Y+    +      +  HDI +++     +EFN+Y QPI L
Sbjct: 83  VVGDWDNNQTDGN---EQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 473 QRSADKDRNYDNVR-LVASGWGRTWTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQPS 649
                KD  Y   R  V SGWG    G    E L    +  I+   C+ +     ++  S
Sbjct: 140 P---SKDFVYTPGRQCVVSGWGSM--GLRYAERLQAALIPIINRFDCVNSSQIYSSMSRS 194

Query: 650 TICTLGYNDTTQSTCQGDSGGPLTVIDEDG 739
             C  GY +    +CQGDSGGP     EDG
Sbjct: 195 AFCA-GYLEGGIDSCQGDSGGPFACRREDG 223


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
 Frame = +2

Query: 134 RIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGLR---VTIIVR 304
           R++ G E+S   +P+  +++++S +G  + CG ++I  N+ LTAAHC        +  VR
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113

Query: 305 AGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRKLEFNDYIQPIRLQRSA 484
            G  + +  G     T    HP Y  N+     +D  ++     +  +   +PI L    
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWY--NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP 170

Query: 485 DKDRNYDNVRLVASGWGRTWTGSA-SPENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTIC 658
                 +N   V +GWG T  GS+ S   L  + +  +S L C    N+   I  PS +C
Sbjct: 171 A----VENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLC 226

Query: 659 TLGYNDTTQSTCQGDSGGPL 718
             GY+     +CQGDSGGPL
Sbjct: 227 A-GYSYGKIDSCQGDSGGPL 245


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 54/189 (28%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
 Frame = +2

Query: 224 CGATIIHSNWGLTAAHCT---GLRVTIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNV 394
           CGAT+I   W +TAAHC      R  + VR    N  R    F   +   H  Y+   N 
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERS---FSVKEAYIHSGYN---NQ 119

Query: 395 VQPHDIGLIDFGRKLEFNDYIQPIRLQRSADK-DRNYDNVRLVASGWGRTWTGSASPENL 571
              +DI L+     L     I+P+ L     K  + Y N  ++  G       S  P+ +
Sbjct: 120 TADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLI 178

Query: 572 NWVFLNG-----ISNLRCMVAYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTV 724
           N   L       IS+  C+  + F    S  I    IC   Y      T  GDSGGPL +
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLI 235

Query: 725 IDEDGQITQ 751
              +G+  Q
Sbjct: 236 HKSNGEYVQ 244


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 389 NVVQPHDIGLIDFGRKLEFNDYIQPIRLQRSADKDRNYDNVRLVASGWGRTWTGSASPEN 568
           N ++ HD  +++  +++ F++ ++PI L R       Y    L   GWGR +  + S   
Sbjct: 138 NCLKGHDWAIVEVEKRIHFSENVRPICLPR----PNMYYTKSLAVPGWGRIF--NESGPL 191

Query: 569 LNWVFLNGISNLRCMVAYNFS-PTIQPSTICTLGYNDTTQS---TCQGDSGGPLTVIDED 736
           ++ + +    +  C   ++   P      IC    N +  S   TC GDSGG L   D++
Sbjct: 192 IHEIPMR--IDRDCKRPWSDRLPADADDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDN 249


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = -1

Query: 412 NIMRLHYVQIFAVLRMIYVLSGLEKQAGTGQVHCSSSDDDCYTQTGAVSSCKPPVAMNDG 233
           N+  +  +Q+ + LR+  +  G + +  T Q HC SSD +    +   SS     + ++G
Sbjct: 303 NLAVISGIQVTSSLRIFTISIGAKAEDVTTQSHCISSDANIIKVSPTCSSVYLDGSESNG 362

Query: 232 GSAGVDSSHSTDHTNRELVRELAFTRLP 149
            S     +H   +T     R + F +LP
Sbjct: 363 SSDAQVYAHYLRYTTTYSFR-VWFPKLP 389


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 635 TIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDG 739
           T      C LGY+D T   CQ + G P +++ ++G
Sbjct: 552 TCSTGYFCHLGYDDATTVCCQSE-GDPCSLVVKEG 585


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 173 PYQLSIRMVSTVGGVNA-CGATIIHSNWGLTAAHC 274
           P+ + IR+ +  G     CG T+I     LTAAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,119
Number of Sequences: 27780
Number of extensions: 352075
Number of successful extensions: 1153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)