Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g13f
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    65   6e-13
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.57 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 8/204 (3%)
 Frame = +2

Query: 131 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC----TGLRVTII 298
           SRIV G      +FP    I+     G +  CGATII   + LTAAHC       ++ I+
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 299 VRA---GAVNLTRPGLLFETTKYINHPEYS-ENLNVVQPHDIGLIDFGRKLEFNDYIQPI 466
           V      +   T   +L    K I HP+Y     +  Q +DI L+   + ++F D + P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 467 RLQRSADKDRNYDNVRLVASGWGRTWTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQP 646
            L      D ++    +   GWG T         L    LN ++ + C   Y +   I  
Sbjct: 277 CLPFQHFLD-SFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVEC---YKYYGNIMV 332

Query: 647 STICTLGYNDTTQSTCQGDSGGPL 718
           + +C        +  CQ DSGGP+
Sbjct: 333 NAMCAYAKG---KDACQMDSGGPV 353


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 76  GERLTPDERHQKYHN 32
           GE +TP + HQ YH+
Sbjct: 152 GEEITPRQSHQSYHH 166


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 581 FLNGISNLRCMVAYNFSPTIQPSTICTLGYNDTTQ 685
           FLNG+ NL   + +++     PS IC    N+T Q
Sbjct: 96  FLNGLDNLHEYLKFSYPRMRAPSFICE---NETRQ 127


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 PCRVLELYQDGRRVKASSLT 179
           P + + LYQDGR + +S LT
Sbjct: 106 PNKFVRLYQDGRVLYSSRLT 125


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 IIHSNWGLTAAHCTGLRVTIIVRAGAVNLTRPGLLFETTKYINH 367
           +++  W +         V+II+    + L   GLL   ++Y+NH
Sbjct: 394 LLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLLRNRSEYLNH 437


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 325  GQVHCSSSDDDCYTQTG 275
            G+ H S  DD  Y QTG
Sbjct: 1610 GKGHGSDKDDVVYQQTG 1626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,557
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)