Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g12f
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   147   2e-36
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.9  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   9.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  147 bits (356), Expect = 2e-36
 Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
 Frame = +3

Query: 309 HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK 482
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENAL 172

Query: 483 QRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYI 662
           + L++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+   
Sbjct: 173 KGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATY 232

Query: 663 RHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LF 755
                H +  HH GFE    Y HF DVV LF
Sbjct: 233 NIYTYHLTNTHHNGFECGIYYWHFCDVVWLF 263



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = +1

Query: 19  HPFHLVDYRP*PFTGAIGVL--TLITGXXXXXXXXXXXXXXXXXXXXXXXAYQ**RDISR 192
           HP+H+V   P PF  ++ +    L                           Y   RD+S 
Sbjct: 14  HPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMST 73

Query: 193 EGTYQGKHTILVNKGLR*G 249
           E    G HT  V KGL+ G
Sbjct: 74  EANIHGAHTKAVTKGLKIG 92


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 609 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 734
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 456 IENNFSQTKQRLFLTILLGFYFTILQAYE 542
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,556
Number of Sequences: 5004
Number of extensions: 38735
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)