Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g10r
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.83 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 138 LTHLRSKFRFIFLLLNHLFVQKKACFICK 52
           + ++++ F  +F+++N L   +  CF+CK
Sbjct: 1   MLNMKNIFPVLFVIINVLLHGQVICFVCK 29


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 777 KVYNLXCKKIIIEHYIAC 724
           +++NL C  ++I H+  C
Sbjct: 278 RIFNLICMMLLIGHWSGC 295


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 777 KVYNLXCKKIIIEHYIAC 724
           +++NL C  ++I H+  C
Sbjct: 246 RIFNLICMMLLIGHWSGC 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,834
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)