Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g10f
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...   100   2e-22
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   6.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   9.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.0  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score =  100 bits (240), Expect = 2e-22
 Identities = 54/150 (36%), Positives = 81/150 (54%)
 Frame = +3

Query: 276 GQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFM 455
           GQAT  THPH++Q G LT  I+ +EY  RR+ + S L            +++ +A  + M
Sbjct: 42  GQATDSTHPHILQPGELTPRISAQEYKTRRDRVASLL-------EDNDFMIVTSAPVRHM 94

Query: 456 SDKIPYVFRQNSDFFYLTGCLEPSAILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTG 635
                Y + Q+ +F+YLTGCLEP+A+L+M K   S ++   L++  K+ + E WEG RTG
Sbjct: 95  CGAAFYEYHQDPNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSKNPYIEKWEGLRTG 154

Query: 636 CTAATQLFAVDEARPVDSFSVYINKLAASS 725
            T   +LF ++        S  IN L   S
Sbjct: 155 STLGKKLFQIENVYDSSLASSVINALGKKS 184


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 639 TAATQLFAVDEARPVDSFSVYINKLAASSKPSVLWY 746
           T   Q+F  +   P  + +V +  L A++K  +LW+
Sbjct: 633 TLGVQIFTEESEHPFGTANVSLQDLFAATKTGLLWF 668


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 266  LWYRECRSLYRSRGVVNCRKASKLISY 186
            +WYRECRS Y    V++ +   + I Y
Sbjct: 1003 VWYRECRSHYFISPVLSNQVIDEKIQY 1029


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 760 GASLWYHRTEGLDDAANLLMYTLKL-STGLASSTANSC 650
           G   +YH      DAAN+L   LK+ ST   S     C
Sbjct: 249 GDDAYYHLRSVAQDAANILQEILKIESTSTTSQIKPKC 286


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 225 PPGAVERPTLSIPQGTFGQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRL 386
           P   V  P  ++PQ     A+ HT   +      T   T+ E+A +RE + ++L
Sbjct: 370 PTPPVSYPAHNVPQKGVRPASPHTLKSVKDDLKRTKTYTKAEFAAKREEIFNKL 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,094
Number of Sequences: 5004
Number of extensions: 66448
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)