Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g10f
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    94   1e-19
01_06_0706 + 31352513-31352813,31352906-31353363                       34   0.14 
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    29   5.4  
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336...    28   7.1  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   9.4  

>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 51/159 (32%), Positives = 82/159 (51%)
 Frame = +3

Query: 276 GQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFM 455
           GQ T  +HP L+ +G +T GIT  EY  RR+ L+  L  ++       + +I +A +Q M
Sbjct: 94  GQPTPRSHPELLAEGEITPGITSDEYIFRRKKLLEVLPEKS-------LAIIASAEQQMM 146

Query: 456 SDKIPYVFRQNSDFFYLTGCLEPSAILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTG 635
           +D +PY FRQN D+ Y+TGC +P  + V+     S+     +F+ +      +W+G   G
Sbjct: 147 TDVVPYSFRQNGDYLYITGCAQPGGVAVL-----SEETGLCMFMPDTSKEDVVWQGQTAG 201

Query: 636 CTAATQLFAVDEARPVDSFSVYINKLAASSKPSVLWYHN 752
             AA   F  D+A P+      + ++   SK   + YHN
Sbjct: 202 VEAAENFFKADKAFPLSEMQKILPEMIERSK---VVYHN 237


>01_06_0706 + 31352513-31352813,31352906-31353363
          Length = 252

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 132 RKVLPSLAVKHHKLLKSHIRNQLRCLSTIDHPPGAVERPTLSIPQGTFGQATC 290
           RK+  SL  +  +L  SH       L    H PG +E+  L    GTFG+  C
Sbjct: 108 RKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEKAELEKMAGTFGKFWC 160


>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
            36135008-36135128,36135227-36135266,36135811-36135863,
            36135937-36135998,36136354-36136506,36136949-36137160,
            36137480-36138972,36140560-36141483,36141734-36142043,
            36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 93   TKAIKSTKTM-QRLRKVLPSLAVKHHKLLKSHIRNQLRCLSTIDHPPGAVERPTLSIPQG 269
            TK I +   + QR    LP L VK  +     ++N+       D  PG    PTL +  G
Sbjct: 958  TKKISAIMQLDQRKSATLPELKVKSPRAPSISVKNKTIAREIRDGDPGGKSPPTLEVTDG 1017


>11_01_0441 -
           3363069-3363137,3363273-3363430,3363549-3363613,
           3363709-3363777,3363881-3363973,3364081-3364184,
           3364327-3364410,3364486-3364693,3364809-3364880,
           3365005-3365080,3365788-3365900,3366006-3366153,
           3366996-3367073,3367968-3368097,3368296-3368486,
           3368644-3368704,3368847-3368956,3369090-3369312
          Length = 683

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 353 IFFLC-DPASKMPLLDQVRMGVTGCLAEGALWYRECRSLYRS 231
           IFF+C  P   +PLL       T  LA  A W+ +C    RS
Sbjct: 440 IFFVCLQPELNLPLLKAASSMPTIRLARYAKWFNDCSEDIRS 481


>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 580 YLFTRKTVMQNCGKVLELAARLPH 651
           ++ TR   M++ G+V+ELA +LPH
Sbjct: 720 FMHTRGLQMRSLGQVVELADKLPH 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,726,132
Number of Sequences: 37544
Number of extensions: 427336
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)