Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g09f
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   5.4  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.4  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   9.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.4  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 294 HSLPSK**HVPTMTREHYNCYSLIPKIVFVK 202
           HSL +   H+PT+  E+ + YSL+P I+F K
Sbjct: 722 HSLKA---HLPTIFDENKSLYSLLPVILFSK 749


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 688 NKISNFNFKLEKLLLID 638
           N+I N N KLEKLL+I+
Sbjct: 792 NRIGNINQKLEKLLMIE 808


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 602 YIVLRYVNALVSIQHTISGASELTHYTSELTHRHSPLS--FSP 480
           +IV+R +  L+SI   + GA+  T YT+ +THR    S  FSP
Sbjct: 154 HIVVRVLLLLLSICFFV-GAAFYTAYTTNVTHRGIGFSLIFSP 195


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 602 YIVLRYVNALVSIQHTISGASELTHYTSELTHRHSPLS--FSP 480
           +IV+R +  L+SI   + GA+  T YT+ +THR    S  FSP
Sbjct: 154 HIVVRVLLLLLSICFFV-GAAFYTAYTTNVTHRGIGFSLIFSP 195


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 424 SSTSQNLPPDRKRDPLRKSGEKLNGLCLWVNSL 522
           S    NLP D +      + EK N  C+W+NS+
Sbjct: 91  SFLKNNLPVDTESSSEAFTIEKDNNSCVWLNSV 123


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 224 YQKSFLLSTKTLHLFNSTNHTLKFYKLDATAYLQSGHH*KRSCIYSYIISNQLFSLSSCS 45
           +QK  L S K + + N T H+   Y L +    Q  +    +CI   I+  + F  +SCS
Sbjct: 665 FQKDCLHSNKQIEVLNPTKHSNHLYILQSKISQQFQNDGIFACI--PIMFGERFYKASCS 722


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 118 GTIKKDRVYILTLFLTNFFHYL 53
           GT   D ++ L  FLTN+++Y+
Sbjct: 443 GTFGPDEMFQLNPFLTNYYNYI 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,292
Number of Sequences: 5004
Number of extensions: 54548
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)