Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g07r
         (889 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    35   0.34 
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    35   0.34 
BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    34   0.79 
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    34   0.79 
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    34   0.79 
BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis ...    33   1.8  

>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +3

Query: 606 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 785
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 786 RSLQNQQGKSTLSTGN 833
           RS  +  G S+ S+ +
Sbjct: 345 RSSASLSGSSSSSSSS 360


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +3

Query: 606 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 785
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 786 RSLQNQQGKSTLSTGN 833
           RS  +  G S+ S+ +
Sbjct: 345 RSSASLSGSSSSSSSS 360


>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.9 bits (74), Expect = 0.79
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 606 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 776
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 777 HFLRSLQNQQGKSTLSTGN 833
              RS  +  G S+ S+ +
Sbjct: 347 RRRRSSASLSGSSSSSSSS 365


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.9 bits (74), Expect = 0.79
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 606 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 776
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 777 HFLRSLQNQQGKSTLSTGN 833
              RS  +  G S+ S+ +
Sbjct: 347 RRRRSSASLSGSSSSSSSS 365


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 33.9 bits (74), Expect = 0.79
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 606 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 776
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 777 HFLRSLQNQQGKSTLSTGN 833
              RS  +  G S+ S+ +
Sbjct: 347 RRRRSSASLSGSSSSSSSS 365


>BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis
           virus E26 oncogene homolog (avian) protein.
          Length = 479

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +3

Query: 513 FPHSSFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGH 692
           FP++S   V+P  +Q   +  RP L +    RS     GH  PQ +  +   S   +   
Sbjct: 231 FPNTS---VYPEATQR--ITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTED 285

Query: 693 RRPQLEHRGFLRSLQSQPGNRHS-QLELRHFLRSLQNQQGKSTLST 827
           +RPQL+    L    S+  N  S Q++L  FL  L +    S+  T
Sbjct: 286 QRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSCIT 331


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,713,881
Number of Sequences: 237096
Number of extensions: 2090276
Number of successful extensions: 5306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5267
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)