Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g06f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    31   0.17 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   5.0  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   6.6  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   8.7  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 352 RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYL 239
           +F K  PTP  VR  LAN V    +      P  A+Y+
Sbjct: 254 KFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAIYV 291


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 119  VSHF-ISRHRDDRGQYEQ*SELHLAGNLYWYSESIVSYDH 3
            +S F IS+H D+   Y+  + L + G+++W +  ++  DH
Sbjct: 971  ISDFGISKHSDN--VYDNDANLSMQGSIFWMAPEVIHNDH 1008


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 513 RESLIKKMGRTNFLCKRKNKN-FVSLHVNVQN 421
           R  L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 151 LKALDLSVDLGSATSLVDTATIAVNTNNRANFILQETC 38
           LKALD S+  GS   L D   I  +  N A F    TC
Sbjct: 340 LKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTC 377


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 516 IRESLIKKMGRTNFLCKRK 460
           +R+ +IKK    NFLC  K
Sbjct: 171 VRDKIIKKCAEVNFLCIHK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,444
Number of Sequences: 5004
Number of extensions: 39115
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)