Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g05r
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   3.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   8.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 798 GSETRPTEKIRRETQWIFFIVRSKYENLFNDINSD 694
           G E R   K+ R + WIF+I   ++  + +DIN +
Sbjct: 514 GFEQRNIHKVLRPSLWIFYITTEEWVKI-SDINEE 547


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 564 VLLNSYFILFILHKLNYAFVFAIIDKATIYCTFLFFY 674
           VLLN   +  I H  +Y F F      + Y  FL+FY
Sbjct: 160 VLLNLLLLPPIFHFYSYPFFFVDHPPLSSYSPFLWFY 196


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 465 YWHWLISFNE*FRSYYILCDHNVFTNGIFTN---KNLW 361
           Y HW     +  + +YI+CD N +  G++++   KN W
Sbjct: 255 YMHWTPLKGQ--KMHYIVCDTNGYLFGVYSSILGKNKW 290


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 563 YAQLHAGNSNEIIFYNVTSTQN--NGFL 486
           YA+  A N+N  +FY V   QN  NGF+
Sbjct: 246 YAEDSAYNTNTSLFYGVVGHQNGSNGFI 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,154
Number of Sequences: 5004
Number of extensions: 61456
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)