Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19g05f
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007...    29   5.4  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    28   7.2  
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189...    28   9.5  

>01_05_0157 +
           18699566-18699853,18699956-18700061,18700268-18700712,
           18700852-18700880,18701014-18701207,18701497-18702211,
           18702552-18702571
          Length = 598

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 629 AILRSKYLMPISSCCLVSRACVIVHRKIVPR 537
           AILRS    PI + C +  AC ++H  I+ +
Sbjct: 197 AILRSPSYFPIKTQCRIIMACALLHNLILQK 227


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 391 SDLPIQLKD-IPIIYLAIPGSHDSMTYGI 474
           S  P+   D +P + L IPGSHDS   G+
Sbjct: 110 SSCPLPRSDQLPYVGLGIPGSHDSWDLGL 138


>07_01_0253 +
           1888831-1889399,1890121-1890526,1890980-1891195,
           1891441-1891548,1892085-1892359,1892462-1892714
          Length = 608

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 768 IEMLAVKYHYLSRMFINELFDLLQCLCYFS 679
           +++L  KY YL R+ +  L DL++   +FS
Sbjct: 499 VDVLRPKYQYLRRVMVRPLIDLVEFPRFFS 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,903,514
Number of Sequences: 37544
Number of extensions: 370136
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)